Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7A05_RS18090 Genome accession   NZ_CP027591
Coordinates   3080726..3081355 (-) Length   209 a.a.
NCBI ID   WP_032186268.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3011     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3075726..3086355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A05_RS18075 helD 3075968..3078022 (-) 2055 WP_000420537.1 DNA helicase IV -
  C7A05_RS18080 yccF 3078145..3078591 (+) 447 WP_062882281.1 YccF domain-containing protein -
  C7A05_RS18085 yccS 3078601..3080763 (+) 2163 WP_074434046.1 YccS family putative transporter -
  C7A05_RS18090 sxy/tfoX 3080726..3081355 (-) 630 WP_032186268.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7A05_RS18095 sulA 3081574..3082083 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7A05_RS18105 ompA 3082440..3083480 (+) 1041 WP_062882317.1 porin OmpA -
  C7A05_RS18110 matP 3083556..3084008 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C7A05_RS18115 ycbZ 3084194..3085954 (+) 1761 WP_062882282.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.04 Da        Isoelectric Point: 8.9883

>NTDB_id=236481 C7A05_RS18090 WP_032186268.1 3080726..3081355(-) (sxy/tfoX) [Escherichia coli strain 2014C-3011]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=236481 C7A05_RS18090 WP_032186268.1 3080726..3081355(-) (sxy/tfoX) [Escherichia coli strain 2014C-3011]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995