Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C7A05_RS10395 Genome accession   NZ_CP027591
Coordinates   1756861..1758288 (-) Length   475 a.a.
NCBI ID   WP_024226108.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3011     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751861..1763288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A05_RS10365 yeeZ 1751916..1752740 (+) 825 WP_053904474.1 SDR family oxidoreductase -
  C7A05_RS10370 yeeY 1752786..1753715 (+) 930 WP_096851599.1 LysR substrate-binding domain-containing protein -
  C7A05_RS10375 yoeI 1753930..1753992 (+) 63 WP_010723108.1 membrane protein YoeI -
  C7A05_RS10380 plaP 1753982..1755340 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C7A05_RS10385 tsuA 1755519..1756577 (+) 1059 WP_053904473.1 thiosulfate utilization transporter TsuA/YeeE -
  C7A05_RS10390 tsuB 1756591..1756818 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C7A05_RS10395 sbcB 1756861..1758288 (-) 1428 WP_024226108.1 exodeoxyribonuclease I Machinery gene
  C7A05_RS10400 dacD 1758497..1759658 (+) 1162 Protein_1738 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C7A05_RS10405 - 1759777..1760022 (+) 246 Protein_1739 GyrI-like domain-containing protein -
  C7A05_RS10410 - 1760030..1761181 (-) 1152 WP_001254932.1 IS30-like element IS30 family transposase -
  C7A05_RS10415 - 1761243..1761473 (+) 231 Protein_1741 effector binding domain-containing protein -
  C7A05_RS10420 yeeA 1761672..1762730 (+) 1059 WP_001200891.1 FUSC family protein -
  C7A05_RS10425 tmaR 1762902..1763231 (+) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54495.79 Da        Isoelectric Point: 5.4589

>NTDB_id=236470 C7A05_RS10395 WP_024226108.1 1756861..1758288(-) (sbcB) [Escherichia coli strain 2014C-3011]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENHNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=236470 C7A05_RS10395 WP_024226108.1 1756861..1758288(-) (sbcB) [Escherichia coli strain 2014C-3011]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCACAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment