Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C7A05_RS05910 Genome accession   NZ_CP027591
Coordinates   925464..925979 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2014C-3011     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 920464..930979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A05_RS05865 csrA 921051..921236 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C7A05_RS05895 yqaB 922694..923260 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C7A05_RS05900 yqaA 923257..923685 (+) 429 WP_001287457.1 YqaA family protein -
  C7A05_RS05905 gshA 923758..925314 (+) 1557 WP_062881990.1 glutamate--cysteine ligase -
  C7A05_RS05910 luxS 925464..925979 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C7A05_RS05915 emrB 926043..927581 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C7A05_RS05920 emrA 927598..928770 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C7A05_RS05925 emrR 928897..929427 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C7A05_RS05930 ygaH 929518..929853 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C7A05_RS05935 ygaZ 929843..930580 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=236461 C7A05_RS05910 WP_001130211.1 925464..925979(+) (luxS) [Escherichia coli strain 2014C-3011]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=236461 C7A05_RS05910 WP_001130211.1 925464..925979(+) (luxS) [Escherichia coli strain 2014C-3011]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731