Detailed information NTG0236458

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7A05_RS05600
• Genome accession: NZ_CP027591
• Coordinates: 867945..868937 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-3011
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 862945..873937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7A05_RS05570	ispD	863006..863716 (+)	711	WP_000246140.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C7A05_RS05575	ispF	863716..864195 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7A05_RS05580	truD	864192..865241 (+)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
C7A05_RS05585	surE	865222..865983 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C7A05_RS05590	pcm	865977..866603 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C7A05_RS05595	nlpD	866788..867882 (+)	1095	WP_306308431.1	murein hydrolase activator NlpD	-
C7A05_RS05600	rpoS	867945..868937 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C7A05_RS05605	-	869058..869465 (-)	408	WP_001208074.1	MarR family transcriptional regulator	-
C7A05_RS05610	-	869612..870205 (+)	594	WP_024226284.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C7A05_RS05615	-	870205..871632 (+)	1428	WP_062881976.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C7A05_RS05620	-	871643..871879 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C7A05_RS05625	ygbN	871919..873283 (-)	1365	WP_062881977.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=236458 C7A05_RS05600 WP_000081550.1 867945..868937(+) (rpoS) [Escherichia coli strain 2014C-3011]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=236458 C7A05_RS05600 WP_000081550.1 867945..868937(+) (rpoS) [Escherichia coli strain 2014C-3011]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715