Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | A6J90_RS07185 | Genome accession | NZ_CP022076 |
| Coordinates | 1359346..1360299 (+) | Length | 317 a.a. |
| NCBI ID | WP_002839071.1 | Uniprot ID | A0A5Z1EHW0 |
| Organism | Campylobacter jejuni strain FDAARGOS_262 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1340734..1374690 | 1359346..1360299 | within | 0 |
Gene organization within MGE regions
Location: 1340734..1374690
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J90_RS07090 (A6J90_07090) | pglI | 1340734..1341663 (-) | 930 | WP_002882940.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| A6J90_RS07095 (A6J90_07095) | pglH | 1341656..1342735 (-) | 1080 | WP_079460667.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| A6J90_RS07100 (A6J90_07100) | pglK | 1342732..1344426 (-) | 1695 | WP_002883263.1 | ABC-type lipopolysaccharide transporter PglK | - |
| A6J90_RS07105 (A6J90_07105) | galE | 1344420..1345406 (-) | 987 | WP_002883265.1 | UDP-glucose 4-epimerase GalE | - |
| A6J90_RS07110 (A6J90_07110) | - | 1345464..1346258 (-) | 795 | WP_002883266.1 | 3'-5' exonuclease | - |
| A6J90_RS07115 (A6J90_07115) | waaC | 1346324..1347352 (+) | 1029 | WP_002883267.1 | lipopolysaccharide heptosyltransferase I | - |
| A6J90_RS07120 (A6J90_07120) | htrB | 1347342..1348229 (+) | 888 | WP_002883268.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| A6J90_RS07125 (A6J90_07125) | - | 1348226..1349773 (+) | 1548 | WP_002883269.1 | glycosyltransferase | - |
| A6J90_RS07130 (A6J90_07130) | - | 1349777..1350949 (+) | 1173 | WP_052802058.1 | glycosyltransferase family 2 protein | - |
| A6J90_RS07135 (A6J90_07135) | - | 1350993..1352053 (+) | 1061 | Protein_1379 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| A6J90_RS09290 | - | 1352025..1352920 (-) | 896 | Protein_1380 | glycosyltransferase family 2 protein | - |
| A6J90_RS07150 (A6J90_07150) | - | 1353009..1353884 (+) | 876 | WP_002882964.1 | alpha-2,3-sialyltransferase | - |
| A6J90_RS07155 (A6J90_07155) | neuB | 1353885..1354925 (+) | 1041 | WP_002882963.1 | N-acetylneuraminate synthase | - |
| A6J90_RS07160 (A6J90_07160) | neuC | 1354922..1356046 (+) | 1125 | WP_002882962.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| A6J90_RS07165 (A6J90_07165) | - | 1356039..1356581 (+) | 543 | Protein_1384 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| A6J90_RS09530 | - | 1356653..1356985 (+) | 333 | WP_016818192.1 | hypothetical protein | - |
| A6J90_RS07170 (A6J90_07170) | - | 1356982..1357647 (+) | 666 | WP_002869017.1 | acylneuraminate cytidylyltransferase family protein | - |
| A6J90_RS07175 (A6J90_07175) | - | 1357635..1358468 (+) | 834 | WP_002882959.1 | CatB-related O-acetyltransferase | - |
| A6J90_RS07180 (A6J90_07180) | - | 1358460..1359287 (-) | 828 | WP_002869015.1 | glycosyltransferase family 2 protein | - |
| A6J90_RS07185 (A6J90_07185) | waaF | 1359346..1360299 (+) | 954 | WP_002839071.1 | glycosyltransferase family 9 protein | Regulator |
| A6J90_RS07190 (A6J90_07190) | - | 1360306..1361061 (-) | 756 | WP_002869013.1 | glycosyltransferase family 25 protein | - |
| A6J90_RS07195 (A6J90_07195) | gmhA | 1361061..1361621 (-) | 561 | WP_002869012.1 | D-sedoheptulose 7-phosphate isomerase | - |
| A6J90_RS07200 (A6J90_07200) | rfaE1 | 1361618..1363003 (-) | 1386 | WP_002882955.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| A6J90_RS07205 (A6J90_07205) | rfaD | 1362996..1363949 (-) | 954 | WP_002882954.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| A6J90_RS07210 (A6J90_07210) | gmhB | 1363950..1364510 (-) | 561 | WP_002882953.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| A6J90_RS07215 (A6J90_07215) | - | 1364592..1364894 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| A6J90_RS07220 (A6J90_07220) | ccoS | 1364917..1365123 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| A6J90_RS07225 (A6J90_07225) | - | 1365120..1367477 (-) | 2358 | WP_079263880.1 | heavy metal translocating P-type ATPase | - |
| A6J90_RS07230 (A6J90_07230) | rho | 1367586..1368884 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| A6J90_RS07235 (A6J90_07235) | dnaX | 1368888..1370423 (+) | 1536 | WP_002858347.1 | DNA polymerase III subunit gamma/tau | - |
| A6J90_RS07240 (A6J90_07240) | - | 1370500..1372401 (+) | 1902 | WP_002882950.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| A6J90_RS07245 (A6J90_07245) | copA | 1372391..1374496 (-) | 2106 | WP_002894644.1 | copper-translocating P-type ATPase CopA | - |
| A6J90_RS07250 (A6J90_07250) | - | 1374496..1374690 (-) | 195 | WP_002882808.1 | cation transporter | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36557.15 Da Isoelectric Point: 10.2875
>NTDB_id=236437 A6J90_RS07185 WP_002839071.1 1359346..1360299(+) (waaF) [Campylobacter jejuni strain FDAARGOS_262]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN
Nucleotide
Download Length: 954 bp
>NTDB_id=236437 A6J90_RS07185 WP_002839071.1 1359346..1360299(+) (waaF) [Campylobacter jejuni strain FDAARGOS_262]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
93.631 |
99.054 |
0.927 |