Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   MMP_RS06720 Genome accession   NC_005791
Coordinates   1290662..1291021 (-) Length   119 a.a.
NCBI ID   WP_011171248.1    Uniprot ID   Q6LXP5
Organism   Methanococcus maripaludis S2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285662..1296021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMP_RS06695 (MMP1299) - 1286147..1286599 (-) 453 WP_011171243.1 beta-class carbonic anhydrase -
  MMP_RS06700 (MMP1300) - 1286620..1287153 (-) 534 WP_011171244.1 hypothetical protein -
  MMP_RS06705 (MMP1301) - 1287191..1288015 (-) 825 WP_011171245.1 formate/nitrite transporter family protein -
  MMP_RS06710 (MMP1302) - 1288260..1288505 (-) 246 WP_011171246.1 selenium-binding protein -
  MMP_RS06715 (MMP1303) - 1288715..1290634 (-) 1920 WP_011171247.1 cache domain-containing protein -
  MMP_RS06720 (MMP1304) cqsS 1290662..1291021 (-) 360 WP_011171248.1 response regulator transcription factor Regulator
  MMP_RS06725 (MMP1305) - 1291237..1292640 (+) 1404 WP_011171249.1 FIST signal transduction protein -
  MMP_RS06730 (MMP1306) - 1292666..1293427 (-) 762 WP_011171250.1 4-phosphopantoate--beta-alanine ligase -
  MMP_RS06735 (MMP1307) - 1293490..1294632 (-) 1143 WP_011171251.1 class I SAM-dependent rRNA methyltransferase -
  MMP_RS06740 (MMP1308) fsa 1294684..1295331 (-) 648 WP_011171252.1 fructose-6-phosphate aldolase -
  MMP_RS06745 (MMP1309) - 1295407..1296018 (-) 612 WP_011171253.1 DUF2119 domain-containing protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13591.89 Da        Isoelectric Point: 4.2522

>NTDB_id=23642 MMP_RS06720 WP_011171248.1 1290662..1291021(-) (cqsS) [Methanococcus maripaludis S2]
MKKILVVEDEEDILNLVRIILEINNYKVIVAHDGYQGLEMVKENPDLILLDIMMPGMTGWEFLDKIRADGYDIPVIVLTA
NAQMSTLETAINKKVDDCVVKPFDREDLMEKVNSILNKN

Nucleotide


Download         Length: 360 bp        

>NTDB_id=23642 MMP_RS06720 WP_011171248.1 1290662..1291021(-) (cqsS) [Methanococcus maripaludis S2]
ATGAAAAAAATTTTAGTAGTTGAAGATGAAGAAGATATATTAAATCTCGTTAGAATTATTTTGGAGATTAATAATTATAA
AGTTATTGTTGCACATGATGGCTATCAGGGACTTGAAATGGTTAAAGAAAATCCTGATCTTATCTTACTCGACATTATGA
TGCCAGGAATGACAGGATGGGAGTTTTTAGATAAAATTAGAGCAGATGGATATGATATCCCTGTAATTGTCCTGACTGCA
AATGCGCAAATGAGTACTCTTGAAACTGCAATTAATAAAAAAGTAGATGATTGCGTTGTAAAACCTTTCGATAGGGAAGA
TTTAATGGAAAAGGTTAACTCTATACTCAATAAAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LXP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

37.391

96.639

0.361

Multiple sequence alignment