Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6998_RS15535 Genome accession   NZ_CP027587
Coordinates   2848318..2848833 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2013C-4974     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843318..2853833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6998_RS15510 ygaZ 2843717..2844454 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  C6998_RS15515 ygaH 2844444..2844779 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6998_RS15520 emrR 2844870..2845400 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6998_RS15525 emrA 2845527..2846699 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6998_RS15530 emrB 2846716..2848254 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6998_RS15535 luxS 2848318..2848833 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6998_RS15540 gshA 2848983..2850539 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6998_RS15545 yqaA 2850612..2851040 (-) 429 WP_001287457.1 YqaA family protein -
  C6998_RS15550 yqaB 2851037..2851603 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6998_RS15580 csrA 2853061..2853246 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=236400 C6998_RS15535 WP_001130211.1 2848318..2848833(-) (luxS) [Escherichia coli strain 2013C-4974]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=236400 C6998_RS15535 WP_001130211.1 2848318..2848833(-) (luxS) [Escherichia coli strain 2013C-4974]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731