Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BCE33L_RS20940 Genome accession   NC_006274
Coordinates   4052354..4054093 (-) Length   579 a.a.
NCBI ID   WP_000947757.1    Uniprot ID   -
Organism   Bacillus cereus E33L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4047354..4059093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCE33L_RS20915 (BCE33L3923) - 4047385..4047999 (-) 615 WP_000849726.1 immunity protein Imm33 domain-containing protein -
  BCE33L_RS31490 (BCE33L3924) - 4047983..4049278 (-) 1296 WP_000192127.1 WXG100 family type VII secretion target -
  BCE33L_RS20930 (BCE33L3925) spo0A 4049855..4050649 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  BCE33L_RS20935 (BCE33L3926) spoIVB 4050937..4052235 (-) 1299 WP_002054681.1 SpoIVB peptidase -
  BCE33L_RS20940 (BCE33L3927) recN 4052354..4054093 (-) 1740 WP_000947757.1 DNA repair protein RecN Machinery gene
  BCE33L_RS20945 (BCE33L3928) argR 4054361..4054810 (-) 450 WP_001032581.1 arginine repressor ArgR -
  BCE33L_RS20950 (BCE33L3929) - 4054953..4055792 (-) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  BCE33L_RS20955 (BCE33L3930) dxs 4055796..4057688 (-) 1893 WP_000366447.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BCE33L_RS20960 (BCE33L3931) ispA 4057990..4058880 (-) 891 WP_000150355.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65774.84 Da        Isoelectric Point: 4.8574

>NTDB_id=23640 BCE33L_RS20940 WP_000947757.1 4052354..4054093(-) (recN) [Bacillus cereus E33L]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENNLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRII
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=23640 BCE33L_RS20940 WP_000947757.1 4052354..4054093(-) (recN) [Bacillus cereus E33L]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGCGGTTCGGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGCGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTG
GATATATACCAAAACGTATACGCTGACTATGAGAAGTTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATAACT
TAACTGAAGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCATTAGGTGACGCATATCGCTCGTTAAGTGCT
GATGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGACAAATGGAGAGTATTACACATTTAGACGAAGTGTACCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACCTATTAGAAGAAGTTGCATATCAACTAAGAGAAAAACTCGATATGATGG
AATATGACCCAAATCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATATTAGCGTATGCTGATAAAATTGAACAAGAGATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATCATA
AAGCGAGAAGGAAATGCGGAAGAGCCTCTTGTGGAGGGAGCACCGGTAAGGCTTACAGCGGACGGTTATGATCATGTGGA
ATTTTATATTTCAACCAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTGTCCCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATCCGAAAACAAGTAGCGAATGATCGAACAATTACATCCGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment