Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C7A04_RS12050 Genome accession   NZ_CP027586
Coordinates   2228902..2229378 (+) Length   158 a.a.
NCBI ID   WP_001186704.1    Uniprot ID   -
Organism   Escherichia coli strain 2012EL-2448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223902..2234378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A04_RS12025 - 2226395..2226856 (+) 462 WP_000581501.1 IrmA family protein -
  C7A04_RS28930 - 2226992..2227081 (+) 90 WP_112031555.1 DUF905 family protein -
  C7A04_RS12035 - 2227259..2228080 (+) 822 WP_001241714.1 DUF932 domain-containing protein -
  C7A04_RS12040 - 2228080..2228280 (+) 201 WP_001367430.1 hypothetical protein -
  C7A04_RS12045 - 2228414..2228887 (+) 474 WP_000855069.1 antirestriction protein -
  C7A04_RS12050 radC 2228902..2229378 (+) 477 WP_001186704.1 RadC family protein Machinery gene
  C7A04_RS12055 yeeT 2229447..2229668 (+) 222 WP_000692313.1 DUF987 domain-containing protein -
  C7A04_RS12060 cbeA 2229744..2230121 (+) 378 WP_001380152.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  C7A04_RS12065 - 2230168..2230545 (+) 378 WP_001094432.1 TA system toxin CbtA family protein -
  C7A04_RS12070 - 2230542..2231030 (+) 489 WP_032308658.1 DUF5983 family protein -
  C7A04_RS12075 - 2231042..2231239 (+) 198 WP_000839249.1 DUF957 domain-containing protein -
  C7A04_RS12080 - 2231324..2232169 (+) 846 WP_001280530.1 DUF4942 domain-containing protein -
  C7A04_RS28935 rhuM 2232403..2232564 (+) 162 Protein_2221 RhuM family protein -
  C7A04_RS12095 setC 2232961..2234145 (+) 1185 WP_001172876.1 sugar efflux transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17602.29 Da        Isoelectric Point: 7.6151

>NTDB_id=236327 C7A04_RS12050 WP_001186704.1 2228902..2229378(+) (radC) [Escherichia coli strain 2012EL-2448]
MQQLSFLPGAMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=236327 C7A04_RS12050 WP_001186704.1 2228902..2229378(+) (radC) [Escherichia coli strain 2012EL-2448]
ATGCAACAACTTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGAGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment