Detailed information NTG0236309

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7A04_RS06195
• Genome accession: NZ_CP027586
• Coordinates: 1131803..1132795 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2012EL-2448
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1126803..1137795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7A04_RS06170	ygbN	1127458..1128822 (+)	1365	WP_000104439.1	GntP family transporter	-
C7A04_RS06175	-	1128861..1129097 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C7A04_RS06180	-	1129108..1130535 (-)	1428	WP_000863193.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C7A04_RS06185	-	1130535..1131128 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C7A04_RS06190	-	1131275..1131682 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
C7A04_RS06195	rpoS	1131803..1132795 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C7A04_RS06200	nlpD	1132858..1133952 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C7A04_RS06205	pcm	1134137..1134763 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C7A04_RS06210	surE	1134757..1135518 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C7A04_RS06215	truD	1135499..1136548 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C7A04_RS06220	ispF	1136545..1137024 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7A04_RS06225	ispD	1137024..1137734 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=236309 C7A04_RS06195 WP_000081550.1 1131803..1132795(-) (rpoS) [Escherichia coli strain 2012EL-2448]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=236309 C7A04_RS06195 WP_000081550.1 1131803..1132795(-) (rpoS) [Escherichia coli strain 2012EL-2448]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715