Detailed information NTG0236246

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7A02_RS14500
• Genome accession: NZ_CP027584
• Coordinates: 2739863..2740855 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 00-3076
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2734863..2745855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7A02_RS14475	ygbN	2735518..2736882 (+)	1365	WP_000104439.1	GntP family transporter	-
C7A02_RS14480	-	2736921..2737157 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C7A02_RS14485	-	2737168..2738595 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C7A02_RS14490	-	2738595..2739188 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C7A02_RS14495	-	2739335..2739742 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
C7A02_RS14500	rpoS	2739863..2740855 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C7A02_RS14505	nlpD	2740918..2742012 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C7A02_RS14510	pcm	2742197..2742823 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C7A02_RS14515	surE	2742817..2743578 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C7A02_RS14520	truD	2743559..2744608 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C7A02_RS14525	ispF	2744605..2745084 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7A02_RS14530	ispD	2745084..2745794 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=236246 C7A02_RS14500 WP_000081550.1 2739863..2740855(-) (rpoS) [Escherichia coli strain 00-3076]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=236246 C7A02_RS14500 WP_000081550.1 2739863..2740855(-) (rpoS) [Escherichia coli strain 00-3076]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715