Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CEQ14_RS01385 Genome accession   NZ_CP022056
Coordinates   246951..248327 (-) Length   458 a.a.
NCBI ID   WP_069795468.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 241951..253327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ14_RS01370 (CEQ14_01370) cysE 242977..243618 (-) 642 WP_041079568.1 serine O-acetyltransferase -
  CEQ14_RS01375 (CEQ14_01375) gltX 243965..245419 (-) 1455 WP_011303848.1 glutamate--tRNA ligase -
  CEQ14_RS01380 (CEQ14_01380) - 245837..246895 (-) 1059 WP_037539107.1 PIN/TRAM domain-containing protein -
  CEQ14_RS01385 (CEQ14_01385) radA 246951..248327 (-) 1377 WP_069795468.1 DNA repair protein RadA Machinery gene
  CEQ14_RS01390 (CEQ14_01390) - 248675..251137 (-) 2463 WP_011303851.1 ATP-dependent Clp protease ATP-binding subunit -
  CEQ14_RS01395 (CEQ14_01395) - 251149..252159 (-) 1011 WP_064205519.1 protein arginine kinase -
  CEQ14_RS01400 (CEQ14_01400) - 252152..252703 (-) 552 WP_011303853.1 UvrB/UvrC motif-containing protein -
  CEQ14_RS01405 (CEQ14_01405) - 252720..253181 (-) 462 WP_011303854.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50669.35 Da        Isoelectric Point: 8.0061

>NTDB_id=236244 CEQ14_RS01385 WP_069795468.1 246951..248327(-) (radA) [Staphylococcus saprophyticus strain FDAARGOS_336]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNVSKVQKLNEIKHETTPRVKTNSNEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQYKNVLYITGEESLSQTKLRAERLDEDSSELNVFAETDLEVIHETV
KQIKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKGVKNPSEMFLEERSANVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVIIPESNIGGWQFPEGIKVIGVKSVHEALKYALTKHKK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=236244 CEQ14_RS01385 WP_069795468.1 246951..248327(-) (radA) [Staphylococcus saprophyticus strain FDAARGOS_336]
TTGGCTAAAAAGAAAGTGATTTTTGAATGTATGGCATGTGGTTATCAGTCACCGAAATGGATGGGGAAATGCCCAAACTG
TGGTGGTTGGAATCAAATGGAAGAAATTGTCGAACAAAAGGCAGCCAGTCCAAAACATGGCGTACGCAGTCGAGACAATG
TATCTAAAGTACAAAAATTAAATGAAATTAAACATGAAACAACACCTAGGGTTAAAACAAATTCAAACGAATTTAACCGC
GTACTAGGTGGAGGTATTGTTAATGGTTCACTTGTCTTAATTGGTGGTGATCCTGGTATTGGGAAATCGACATTACTATT
ACAAATTTGTGCATCATTATCCCAATATAAAAACGTATTATATATCACTGGTGAAGAATCATTGAGTCAAACGAAATTAA
GAGCGGAAAGATTAGATGAGGATTCTAGTGAATTAAATGTATTTGCCGAAACAGATTTAGAAGTAATCCATGAAACGGTT
AAACAAATTAAACCAGATTTACTTGTTGTGGATTCTATACAAACAATATTCCACCCTGAAATCAGCTCGGCACCAGGCTC
GGTTTCACAAGTTAGAGAAAGTACGCAGAGCTTAATGAATATAGCTAAACAGATGAATATTGCGACGTTTATTGTCGGAC
ATGTAACAAAAGAAGGTCAAATCGCTGGGCCGCGTTTACTTGAACATATGGTGGACACAGTGCTTTACTTCGAAGGTGAT
GAACACCATGCATATCGTATTTTAAGAGCTGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATCTTTGAGATGAA
GCAAACAGGTTTGAAAGGCGTTAAAAACCCTTCGGAAATGTTTCTTGAAGAACGTTCAGCCAATGTACCAGGTTCCACGA
TTGTTTCTACCATGGAAGGTACGAGACCTTTATTGATTGAAGTACAAGCATTAGTGACACCGACAACTTTTAATAATCCG
AGACGTATGGCAACGGGCATAGATCATAATCGATTGAGTTTGCTCATGGCCGTATTAGAAAAGAAAGAAAATTATCTCCT
TCAGCAGCAAGATGCTTATATCAAAGTTGCGGGTGGTGTGAGACTTACTGAGCCAGCAGTAGATTTAGGTATCATTATTG
CGACGGCTTCAAGCTTTAAAGATTTAACGGTGGACGGCTTGGACTGTTTCATCGGTGAGGTAGGTCTTACTGGAGAAGTC
AGACGTGTTTCTCGAATAGAACAACGTGTCCAAGAAGCTGAAAAATTAGGGTTCAAACGTGTGATTATCCCTGAGTCCAA
TATTGGGGGATGGCAATTTCCTGAAGGTATAAAAGTAATTGGGGTTAAAAGTGTTCATGAAGCTTTAAAATACGCATTAA
CAAAACATAAAAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

99.563

0.653
  radA Streptococcus pneumoniae Rx1

60

98.253

0.59
  radA Streptococcus pneumoniae D39

60

98.253

0.59
  radA Streptococcus pneumoniae R6

60

98.253

0.59
  radA Streptococcus pneumoniae TIGR4

60

98.253

0.59
  radA Streptococcus mitis NCTC 12261

60

98.253

0.59
  radA Streptococcus mitis SK321

60

98.253

0.59

Multiple sequence alignment