Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6999_RS29920 Genome accession   NZ_CP027582
Coordinates   5543525..5544040 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4538     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5538525..5549040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6999_RS29880 csrA 5539385..5539570 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6999_RS29905 yqaB 5540755..5541321 (+) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6999_RS29910 yqaA 5541318..5541746 (+) 429 WP_001287457.1 YqaA family protein -
  C6999_RS29915 gshA 5541819..5543375 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6999_RS29920 luxS 5543525..5544040 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  C6999_RS29925 emrB 5544104..5545642 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6999_RS29930 emrA 5545659..5546831 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6999_RS29935 emrR 5546958..5547488 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6999_RS29940 ygaH 5547579..5547914 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6999_RS29945 ygaZ 5547904..5548641 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=236208 C6999_RS29920 WP_001130207.1 5543525..5544040(+) (luxS) [Escherichia coli strain 2013C-4538]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=236208 C6999_RS29920 WP_001130207.1 5543525..5544040(+) (luxS) [Escherichia coli strain 2013C-4538]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731