Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CEP69_RS21855 Genome accession   NZ_CP022049
Coordinates   4492810..4493424 (+) Length   204 a.a.
NCBI ID   WP_088583130.1    Uniprot ID   -
Organism   Citrobacter braakii strain FDAARGOS_290     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4487810..4498424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP69_RS21835 (CEP69_21835) - 4488171..4489931 (-) 1761 WP_016156136.1 Lon protease family protein -
  CEP69_RS21840 (CEP69_21840) matP 4490117..4490569 (+) 453 WP_016152480.1 macrodomain Ter protein MatP -
  CEP69_RS21845 (CEP69_21845) ompA 4490668..4491726 (-) 1059 WP_016156137.1 porin OmpA -
  CEP69_RS21850 (CEP69_21850) sulA 4492084..4492593 (-) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  CEP69_RS21855 (CEP69_21855) sxy/tfoX 4492810..4493424 (+) 615 WP_088583130.1 TfoX/Sxy family DNA transformation protein Regulator
  CEP69_RS21860 (CEP69_21860) yccS 4493402..4495555 (-) 2154 WP_088583173.1 YccS family putative transporter -
  CEP69_RS21865 (CEP69_21865) - 4495574..4496020 (-) 447 WP_016152485.1 YccF domain-containing protein -
  CEP69_RS21870 (CEP69_21870) helD 4496146..4498200 (+) 2055 WP_016156138.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23169.47 Da        Isoelectric Point: 7.7830

>NTDB_id=236202 CEP69_RS21855 WP_088583130.1 4492810..4493424(+) (sxy/tfoX) [Citrobacter braakii strain FDAARGOS_290]
MKEKSYARIYESQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=236202 CEP69_RS21855 WP_088583130.1 4492810..4493424(+) (sxy/tfoX) [Citrobacter braakii strain FDAARGOS_290]
ATGAAAGAAAAGTCTTATGCAAGAATCTATGAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.657

98.529

0.676

Multiple sequence alignment