Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CEP64_RS25710 Genome accession   NZ_CP022046
Coordinates   2334805..2336175 (-) Length   456 a.a.
NCBI ID   WP_088592567.1    Uniprot ID   A0AAI8GUN2
Organism   Mammaliicoccus sciuri strain FDAARGOS_285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2329805..2341175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP64_RS25685 (CEP64_11640) cysE 2330198..2330839 (-) 642 WP_025904850.1 serine O-acetyltransferase -
  CEP64_RS25690 (CEP64_11645) gltX 2331094..2332548 (-) 1455 WP_048541341.1 glutamate--tRNA ligase -
  CEP64_RS25695 (CEP64_11650) ispF 2332564..2333043 (-) 480 WP_048541339.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CEP64_RS25700 (CEP64_11655) ispD 2333036..2333722 (-) 687 WP_088592566.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CEP64_RS25705 (CEP64_11660) - 2333724..2334782 (-) 1059 WP_048541336.1 PIN/TRAM domain-containing protein -
  CEP64_RS25710 (CEP64_11665) radA 2334805..2336175 (-) 1371 WP_088592567.1 DNA repair protein RadA Machinery gene
  CEP64_RS25715 (CEP64_11670) - 2336331..2338793 (-) 2463 WP_058590882.1 ATP-dependent Clp protease ATP-binding subunit -
  CEP64_RS25720 (CEP64_11675) - 2338810..2339817 (-) 1008 WP_084755396.1 protein arginine kinase -
  CEP64_RS25725 (CEP64_11680) - 2339818..2340354 (-) 537 WP_058590884.1 UvrB/UvrC motif-containing protein -
  CEP64_RS25730 (CEP64_11685) - 2340369..2340830 (-) 462 WP_025904841.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50506.32 Da        Isoelectric Point: 8.1742

>NTDB_id=236166 CEP64_RS25710 WP_088592567.1 2334805..2336175(-) (radA) [Mammaliicoccus sciuri strain FDAARGOS_285]
MAKKKVIFECLACGYQSPKWMGKCPNCGAWNQMEESIEHKETKGPKNTFKSDVPAQKIEKLKDVKEEDTPRIKTKINEFN
RVLGGGVVEGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVRQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTVFHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHTYRILRAVKNRFGSTNEMGIFEMKQTGLNEVKNPSEMFLEERTKHVSGSTIVATMEGTRPILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIVIAIASSFQDKPTKGDDCFVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIIPKNNIKGLEFPKGTEVIGVSTTREALKIAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=236166 CEP64_RS25710 WP_088592567.1 2334805..2336175(-) (radA) [Mammaliicoccus sciuri strain FDAARGOS_285]
ATGGCCAAAAAGAAAGTAATATTTGAGTGTTTAGCCTGCGGATATCAATCTCCAAAATGGATGGGGAAATGCCCTAATTG
TGGTGCATGGAACCAAATGGAAGAATCAATAGAACATAAAGAAACTAAAGGTCCTAAAAATACATTCAAGTCAGATGTAC
CCGCACAAAAAATAGAAAAATTAAAAGACGTTAAAGAAGAAGATACACCTAGAATTAAGACTAAAATCAATGAATTTAAT
CGTGTATTAGGTGGCGGTGTTGTAGAAGGTTCGCTTGTACTTATTGGTGGTGACCCTGGTATTGGTAAATCTACATTATT
ATTACAAATTTGTGCGGCTTTATCTCAACAAAAAAATGTCTTATATGTTTCAGGTGAAGAATCTGTAAGACAAACGAAAT
TAAGAGCTGAAAGATTAGTTGAAGATTCAGGAGAATTAAATGTTTATGCTGAAACGAATTTAGAGATTATACATAGTATG
GTTCAAAAAGAAAAACCAGATGTATTAGTTATAGATTCCATTCAAACTGTCTTCCACCCTGAAGTTACTTCTGCTCCAGG
TTCTGTTTCTCAAGTTAGGGAATGTACACAAAATTTAATGCATATCGCAAAACAAATGAACATTGCTACATTTATTGTAG
GACATGTAACGAAAGATGGACAAATTGCTGGGCCACGTTTGTTAGAACATATGGTTGATACAGTATTATATTTTGAAGGC
GATACACATCATACATACAGAATATTAAGAGCAGTTAAAAACCGTTTTGGTTCGACAAATGAAATGGGTATTTTTGAAAT
GAAGCAAACGGGTCTTAATGAAGTTAAAAATCCGTCTGAAATGTTCTTAGAAGAAAGAACGAAACATGTATCGGGTTCAA
CTATTGTGGCAACTATGGAAGGTACGAGACCTATTTTAGTTGAAGTACAAGCTTTAGTGACGCCAACGACTTTTCATAAT
CCACGAAGAATGGCAACAGGTATTGATCACAATAGATTAAGCTTATTGATGGCTGTATTAGAGAAGAAAGAGAATTTCTT
ATTACAACAACAAGACGCATATATCAAAATTGCCGGTGGTGTAAAATTAAGTGAACCCGCAGTAGATTTAAGTATTGTTA
TCGCGATAGCTTCAAGTTTCCAAGATAAACCTACTAAAGGTGATGATTGTTTCGTAGGTGAGGTTGGCTTAACAGGTGAA
GTAAGAAGGGTTGCTAGAATTGATCAACGTGTACAAGAAGCGGCTAAATTAGGATTTAAACGTATTATCATACCTAAAAA
TAATATTAAAGGTTTAGAATTCCCGAAAGGTACAGAAGTTATTGGCGTATCAACAACAAGAGAAGCATTGAAAATTGCTT
TTAATGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.157

100

0.664
  radA Streptococcus pneumoniae Rx1

62.335

99.561

0.621
  radA Streptococcus pneumoniae D39

62.335

99.561

0.621
  radA Streptococcus pneumoniae R6

62.335

99.561

0.621
  radA Streptococcus pneumoniae TIGR4

62.335

99.561

0.621
  radA Streptococcus mitis NCTC 12261

62.335

99.561

0.621
  radA Streptococcus mitis SK321

62.115

99.561

0.618

Multiple sequence alignment