Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   CEP64_RS23810 Genome accession   NZ_CP022046
Coordinates   1955613..1956584 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain FDAARGOS_285     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1950613..1961584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP64_RS23785 (CEP64_09730) - 1951168..1951689 (+) 522 WP_058591620.1 GrpB family protein -
  CEP64_RS23790 (CEP64_09735) murB 1951759..1952676 (+) 918 WP_058591621.1 UDP-N-acetylmuramate dehydrogenase -
  CEP64_RS23795 (CEP64_09740) - 1952721..1953758 (-) 1038 WP_048539933.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  CEP64_RS23800 (CEP64_09745) - 1953861..1954661 (-) 801 WP_058591622.1 ABC transporter ATP-binding protein -
  CEP64_RS23805 (CEP64_09750) - 1954658..1955623 (-) 966 WP_048539935.1 iron chelate uptake ABC transporter family permease subunit -
  CEP64_RS23810 (CEP64_09755) ceuB 1955613..1956584 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  CEP64_RS23815 (CEP64_09760) - 1956710..1957126 (-) 417 WP_048539936.1 FixH family protein -
  CEP64_RS23820 (CEP64_09765) nrdF 1957276..1958247 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  CEP64_RS23825 (CEP64_09770) nrdE 1958276..1960381 (-) 2106 WP_048539938.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  CEP64_RS23830 (CEP64_09775) nrdI 1960344..1960742 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence


Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=236164 CEP64_RS23810 WP_025905417.1 1955613..1956584(-) (ceuB) [Mammaliicoccus sciuri strain FDAARGOS_285]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=236164 CEP64_RS23810 WP_025905417.1 1955613..1956584(-) (ceuB) [Mammaliicoccus sciuri strain FDAARGOS_285]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACATTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCGAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATTGGACTGATCATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCACATACAGCTGTATTTGGTGCATTGTTTGTCATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains


Predicted by InterproScan.

(14-316)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502


Multiple sequence alignment