Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6999_RS12995 Genome accession   NZ_CP027582
Coordinates   2292047..2292676 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2013C-4538     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287047..2297676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6999_RS12980 helD 2287289..2289343 (-) 2055 WP_001297106.1 DNA helicase IV -
  C6999_RS12985 yccF 2289466..2289912 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6999_RS12990 yccS 2289922..2292084 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C6999_RS12995 sxy/tfoX 2292047..2292676 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6999_RS13000 sulA 2292895..2293404 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6999_RS13010 ompA 2293761..2294801 (+) 1041 WP_000750416.1 porin OmpA -
  C6999_RS13015 matP 2294876..2295328 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6999_RS13020 ycbZ 2295514..2297274 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=236150 C6999_RS12995 WP_000839153.1 2292047..2292676(-) (sxy/tfoX) [Escherichia coli strain 2013C-4538]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=236150 C6999_RS12995 WP_000839153.1 2292047..2292676(-) (sxy/tfoX) [Escherichia coli strain 2013C-4538]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1