Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   C6996_RS22265 Genome accession   NZ_CP027579
Coordinates   4411272..4412462 (-) Length   396 a.a.
NCBI ID   WP_106907749.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4282     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4406272..4417462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6996_RS22255 - 4406813..4410175 (+) 3363 WP_106907748.1 hypothetical protein -
  C6996_RS22260 - 4410227..4410841 (+) 615 WP_001352947.1 hypothetical protein -
  C6996_RS22265 kpsS 4411272..4412462 (-) 1191 WP_106907749.1 capsular biosynthesis protein Regulator
  C6996_RS22270 - 4412497..4414524 (-) 2028 WP_000579522.1 capsular polysaccharide biosynthesis protein -
  C6996_RS22275 kdsB 4414521..4415261 (-) 741 WP_000030742.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6996_RS22280 - 4415271..4416947 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 47318.73 Da        Isoelectric Point: 10.1523

>NTDB_id=236116 C6996_RS22265 WP_106907749.1 4411272..4412462(-) (kpsS) [Escherichia coli strain 2013C-4282]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLKSLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLSMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNGVYYGRTFEIK

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=236116 C6996_RS22265 WP_106907749.1 4411272..4412462(-) (kpsS) [Escherichia coli strain 2013C-4282]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGGCCTATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAAAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTTCACCGACAATATGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCTTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGCA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCTCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTA
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACACAAGTTAATGGGGTTTATTATGGGAGAACTTTTGAGATTAAGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.949

99.242

0.396