Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6996_RS02235 Genome accession   NZ_CP027579
Coordinates   468170..469597 (-) Length   475 a.a.
NCBI ID   WP_000980548.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4282     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463170..474597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6996_RS02210 hisL 464195..464245 (-) 51 WP_001364200.1 his operon leader peptide -
  C6996_RS02215 yeeZ 464672..465496 (+) 825 WP_000754726.1 SDR family oxidoreductase -
  C6996_RS02220 yeeY 465542..466471 (+) 930 WP_000803365.1 LysR substrate-binding domain-containing protein -
  C6996_RS02225 yoeI 466686..466748 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6996_RS02230 plaP 466738..468096 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6996_RS02235 sbcB 468170..469597 (-) 1428 WP_000980548.1 exodeoxyribonuclease I Machinery gene
  C6996_RS02240 dacD 469806..470972 (+) 1167 WP_001353122.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6996_RS02245 sbmC 471091..471564 (+) 474 WP_001105394.1 DNA gyrase inhibitor SbmC -
  C6996_RS02250 yeeA 471762..472820 (+) 1059 WP_001200890.1 FUSC family protein -
  C6996_RS02255 tmaR 472992..473321 (+) 330 WP_000450409.1 DUF496 family protein -
  C6996_RS02260 - 473422..473718 (-) 297 Protein_420 EutP/PduV family microcompartment system protein -
  C6996_RS02265 - 473697..474056 (+) 360 WP_000543512.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54527.80 Da        Isoelectric Point: 5.3498

>NTDB_id=236053 C6996_RS02235 WP_000980548.1 468170..469597(-) (sbcB) [Escherichia coli strain 2013C-4282]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPEAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=236053 C6996_RS02235 WP_000980548.1 468170..469597(-) (sbcB) [Escherichia coli strain 2013C-4282]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGAAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCCGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTTTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment