Detailed information NTG0236041

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6997_RS27815
• Genome accession: NZ_CP027577
• Coordinates: 5112544..5113533 (-)
• Length: 329 a.a.
• NCBI ID: WP_032343032.1
• Uniprot ID: -
• Organism: Escherichia coli strain 2013C-4225
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5107544..5118533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6997_RS27790	ygbN	5108199..5109563 (+)	1365	WP_000104439.1	GntP family transporter	-
C6997_RS27795	-	5109602..5109838 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6997_RS27800	-	5109849..5111276 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6997_RS27805	-	5111276..5111869 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6997_RS27810	-	5112016..5112423 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6997_RS27815	rpoS	5112544..5113533 (-)	990	WP_032343032.1	RNA polymerase sigma factor RpoS	Regulator
C6997_RS27820	nlpD	5113596..5114690 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6997_RS27825	pcm	5114875..5115501 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6997_RS27830	surE	5115495..5116256 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6997_RS27835	truD	5116237..5117286 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C6997_RS27840	ispF	5117283..5117762 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6997_RS27845	ispD	5117762..5118472 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37843.73 Da
• Isoelectric Point: 4.5886

>NTDB_id=236041 C6997_RS27815 WP_032343032.1 5112544..5113533(-) (rpoS) [Escherichia coli strain 2013C-4225]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEVYFAR
RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ
TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADE
KENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG
LNIEALFRE

Nucleotide

• Length: 990 bp

>NTDB_id=236041 C6997_RS27815 WP_032343032.1 5112544..5113533(-) (rpoS) [Escherichia coli strain 2013C-4225]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGTTTATTTTGCGCGT
CGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCGCCG
TTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGTTTG
ACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAACCAA
ACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCATAA
GCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTCGTC
TTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGATGAA
AAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAACGC
CAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTGAAA
TTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGG
CTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-87)

• Sigma-70 region 3 (Sigma70_r3) (173-247)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	98.176	0.714