Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6997_RS13895 Genome accession   NZ_CP027577
Coordinates   2649901..2650530 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2013C-4225     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2644901..2655530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6997_RS13870 ycbZ 2645303..2647063 (-) 1761 WP_000156528.1 Lon protease family protein -
  C6997_RS13875 matP 2647249..2647701 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6997_RS13880 ompA 2647776..2648816 (-) 1041 WP_000750416.1 porin OmpA -
  C6997_RS13890 sulA 2649173..2649682 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6997_RS13895 sxy/tfoX 2649901..2650530 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6997_RS13900 yccS 2650493..2652655 (-) 2163 WP_000875023.1 YccS family putative transporter -
  C6997_RS13905 yccF 2652665..2653111 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6997_RS13910 helD 2653234..2655288 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=236014 C6997_RS13895 WP_000839153.1 2649901..2650530(+) (sxy/tfoX) [Escherichia coli strain 2013C-4225]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=236014 C6997_RS13895 WP_000839153.1 2649901..2650530(+) (sxy/tfoX) [Escherichia coli strain 2013C-4225]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1