Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CDA51_RS18475 Genome accession   NZ_CP022023
Coordinates   3725275..3725871 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 19051     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3720275..3730871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA51_RS18450 - 3720467..3722224 (-) 1758 WP_020324406.1 Lon protease family protein -
  CDA51_RS18455 matP 3722410..3722862 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  CDA51_RS18460 ompA 3722994..3724064 (-) 1071 WP_002898408.1 porin OmpA -
  CDA51_RS18465 sulA 3724417..3724926 (-) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  CDA51_RS18475 sxy/tfoX 3725275..3725871 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  CDA51_RS18480 yccS 3725885..3728020 (-) 2136 WP_004147856.1 YccS family putative transporter -
  CDA51_RS18485 - 3728038..3728484 (-) 447 WP_002898425.1 YccF domain-containing protein -
  CDA51_RS18490 helD 3728609..3730663 (+) 2055 WP_020324408.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=236012 CDA51_RS18475 WP_004179217.1 3725275..3725871(+) (sxy/tfoX) [Klebsiella pneumoniae strain 19051]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=236012 CDA51_RS18475 WP_004179217.1 3725275..3725871(+) (sxy/tfoX) [Klebsiella pneumoniae strain 19051]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment