Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A2F94_RS27490 Genome accession   NZ_CP027573
Coordinates   5197288..5198712 (-) Length   474 a.a.
NCBI ID   WP_000132553.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4081     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5192288..5203712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2F94_RS27460 yeeZ 5192343..5193167 (+) 825 WP_000754755.1 SDR family oxidoreductase -
  A2F94_RS27465 yeeY 5193213..5194142 (+) 930 WP_000803331.1 LysR substrate-binding domain-containing protein -
  A2F94_RS27470 yoeI 5194357..5194419 (+) 63 WP_010723108.1 membrane protein YoeI -
  A2F94_RS27475 plaP 5194409..5195767 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  A2F94_RS27480 tsuA 5195946..5197004 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  A2F94_RS27485 tsuB 5197018..5197245 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  A2F94_RS27490 sbcB 5197288..5198712 (-) 1425 WP_000132553.1 exodeoxyribonuclease I Machinery gene
  A2F94_RS27495 - 5198894..5200072 (+) 1179 WP_001007947.1 site-specific integrase -
  A2F94_RS27500 - 5200053..5200244 (-) 192 WP_000132739.1 AlpA family transcriptional regulator -
  A2F94_RS27505 - 5200326..5200625 (-) 300 WP_158709213.1 hypothetical protein -
  A2F94_RS27510 - 5200697..5200981 (-) 285 WP_000002108.1 ASCH domain-containing protein -
  A2F94_RS32020 - 5200974..5201147 (-) 174 Protein_5090 eaa protein -
  A2F94_RS31675 - 5202425..5203090 (-) 666 WP_394338306.1 hypothetical protein -
  A2F94_RS27535 - 5203087..5203296 (-) 210 WP_000951710.1 hypothetical protein -
  A2F94_RS27540 - 5203298..5203486 (-) 189 WP_000797282.1 hypothetical protein -
  A2F94_RS31125 - 5203483..5203659 (-) 177 WP_001261535.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54426.67 Da        Isoelectric Point: 5.3498

>NTDB_id=235964 A2F94_RS27490 WP_000132553.1 5197288..5198712(-) (sbcB) [Escherichia coli strain 2013C-4081]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=235964 A2F94_RS27490 WP_000132553.1 5197288..5198712(-) (sbcB) [Escherichia coli strain 2013C-4081]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACTGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584