Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A2F94_RS23380 Genome accession   NZ_CP027573
Coordinates   4412925..4413440 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4081     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4407925..4418440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2F94_RS23335 csrA 4408646..4408831 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  A2F94_RS23365 yqaB 4410155..4410721 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  A2F94_RS23370 yqaA 4410718..4411146 (+) 429 WP_001287457.1 YqaA family protein -
  A2F94_RS23375 gshA 4411219..4412775 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  A2F94_RS23380 luxS 4412925..4413440 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  A2F94_RS23385 emrB 4413504..4415042 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  A2F94_RS23390 emrA 4415059..4416231 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  A2F94_RS23395 emrR 4416358..4416888 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  A2F94_RS23400 ygaH 4416979..4417314 (-) 336 WP_000119771.1 L-valine transporter subunit YgaH -
  A2F94_RS23405 ygaZ 4417304..4418041 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=235953 A2F94_RS23380 WP_001130207.1 4412925..4413440(+) (luxS) [Escherichia coli strain 2013C-4081]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=235953 A2F94_RS23380 WP_001130207.1 4412925..4413440(+) (luxS) [Escherichia coli strain 2013C-4081]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731