Detailed information NTG0235950

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A2F94_RS23075
• Genome accession: NZ_CP027573
• Coordinates: 4355445..4356437 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-4081
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4350445..4361437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A2F94_RS23045	ispD	4350506..4351216 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A2F94_RS23050	ispF	4351216..4351695 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A2F94_RS23055	truD	4351692..4352741 (+)	1050	WP_000568972.1	tRNA pseudouridine(13) synthase TruD	-
A2F94_RS23060	surE	4352722..4353483 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A2F94_RS23065	pcm	4353477..4354103 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A2F94_RS23070	nlpD	4354288..4355382 (+)	1095	WP_306365709.1	murein hydrolase activator NlpD	-
A2F94_RS23075	rpoS	4355445..4356437 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A2F94_RS23080	-	4356558..4356965 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
A2F94_RS23085	-	4357112..4357705 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A2F94_RS23090	-	4357705..4359126 (+)	1422	WP_000863199.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A2F94_RS23095	-	4359137..4359373 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A2F94_RS23100	ygbN	4359412..4360776 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=235950 A2F94_RS23075 WP_000081550.1 4355445..4356437(+) (rpoS) [Escherichia coli strain 2013C-4081]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=235950 A2F94_RS23075 WP_000081550.1 4355445..4356437(+) (rpoS) [Escherichia coli strain 2013C-4081]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TATTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715