Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ40_RS01605 Genome accession   NZ_CP022019
Coordinates   308057..308662 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Quebec str. S-1267     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 303057..313662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ40_RS01585 (LFZ40_01585) - 303452..305212 (-) 1761 WP_000156458.1 Lon protease family protein -
  LFZ40_RS01590 (LFZ40_01590) matP 305398..305850 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ40_RS01595 (LFZ40_01595) ompA 305922..306974 (-) 1053 WP_001562588.1 porin OmpA -
  LFZ40_RS01600 (LFZ40_01600) sulA 307331..307840 (-) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  LFZ40_RS01605 (LFZ40_01605) sxy/tfoX 308057..308662 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ40_RS01610 (LFZ40_01610) yccS 308649..310802 (-) 2154 WP_000950879.1 YccS family putative transporter -
  LFZ40_RS01615 (LFZ40_01615) - 310821..311267 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ40_RS01620 (LFZ40_01620) helD 311391..313445 (+) 2055 WP_079822307.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=235923 LFZ40_RS01605 WP_001202375.1 308057..308662(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Quebec str. S-1267]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=235923 LFZ40_RS01605 WP_001202375.1 308057..308662(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Quebec str. S-1267]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGTCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCAAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment