Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   TRNA_RS38030 Genome accession   NC_006270
Coordinates   3205189..3205827 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200189..3210827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS37995 (BL02545) - 3201376..3201807 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  TRNA_RS38000 (BL02546) - 3201807..3202148 (+) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  TRNA_RS38005 (BL02547) - 3202141..3203619 (+) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  TRNA_RS38010 (BL02548) - 3203625..3204101 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  TRNA_RS38015 (BL02549) - 3204101..3204385 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  TRNA_RS38020 (BL02550) mnhG 3204369..3204743 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  TRNA_RS38025 (BL02603) - 3204783..3205172 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  TRNA_RS38030 (BL02604) comA 3205189..3205827 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  TRNA_RS38035 - 3205914..3207101 (-) 1188 Protein_3271 sensor histidine kinase -
  TRNA_RS38045 (BL05319) - 3207189..3208351 (+) 1163 WP_085959889.1 IS3 family transposase -
  TRNA_RS38050 - 3208381..3209523 (-) 1143 WP_223307056.1 PDZ domain-containing protein -
  TRNA_RS38055 (BL02607) comX 3209563..3209727 (-) 165 WP_011198251.1 competence pheromone ComX -
  TRNA_RS38060 (BL02608) - 3209742..3210611 (-) 870 WP_011198252.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=23592 TRNA_RS38030 WP_003184849.1 3205189..3205827(-) (comA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=23592 TRNA_RS38030 WP_003184849.1 3205189..3205827(-) (comA) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment