Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ16_RS08145 Genome accession   NZ_CP022015
Coordinates   1614739..1615344 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar India str. SA20085604     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609739..1620344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ16_RS08125 (LFZ16_08450) - 1610134..1611894 (-) 1761 WP_000156463.1 Lon protease family protein -
  LFZ16_RS08130 (LFZ16_08455) matP 1612080..1612532 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ16_RS08135 (LFZ16_08460) ompA 1612604..1613656 (-) 1053 WP_001562588.1 porin OmpA -
  LFZ16_RS08140 (LFZ16_08465) sulA 1614013..1614522 (-) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  LFZ16_RS08145 (LFZ16_08470) sxy/tfoX 1614739..1615344 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ16_RS08150 (LFZ16_08475) yccS 1615331..1617484 (-) 2154 WP_000950879.1 YccS family putative transporter -
  LFZ16_RS08155 (LFZ16_08480) - 1617503..1617949 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ16_RS08160 (LFZ16_08485) helD 1618073..1620127 (+) 2055 WP_223353270.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=235908 LFZ16_RS08145 WP_001202375.1 1614739..1615344(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar India str. SA20085604]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=235908 LFZ16_RS08145 WP_001202375.1 1614739..1615344(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar India str. SA20085604]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment