Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A2F94_RS07345 Genome accession   NZ_CP027573
Coordinates   1285840..1286424 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4081     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1280840..1291424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2F94_RS07330 helD 1281082..1283136 (-) 2055 WP_001297106.1 DNA helicase IV -
  A2F94_RS07335 yccF 1283259..1283705 (+) 447 WP_001261235.1 YccF domain-containing protein -
  A2F94_RS07340 yccS 1283715..1285877 (+) 2163 WP_000875023.1 YccS family putative transporter -
  A2F94_RS07345 sxy/tfoX 1285840..1286424 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A2F94_RS07350 sulA 1286688..1287197 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A2F94_RS07360 ompA 1287554..1288594 (+) 1041 WP_000750416.1 porin OmpA -
  A2F94_RS07365 matP 1288670..1289122 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A2F94_RS07370 ycbZ 1289308..1291068 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=235895 A2F94_RS07345 WP_077825616.1 1285840..1286424(-) (sxy/tfoX) [Escherichia coli strain 2013C-4081]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=235895 A2F94_RS07345 WP_077825616.1 1285840..1286424(-) (sxy/tfoX) [Escherichia coli strain 2013C-4081]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995