Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJE04_RS10750 Genome accession   NC_005139
Coordinates   2272897..2273373 (+) Length   158 a.a.
NCBI ID   WP_039545922.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2267897..2278373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS10730 (VV2245) - 2269491..2270516 (+) 1026 WP_011150756.1 porin -
  BJE04_RS10735 (VV2247) - 2270526..2271305 (+) 780 WP_011150757.1 SGNH/GDSL hydrolase family protein -
  BJE04_RS10740 (VV2248) - 2271446..2272330 (+) 885 WP_043877262.1 MurR/RpiR family transcriptional regulator -
  BJE04_RS10745 (VV_RS10750) - 2272573..2272749 (-) 177 WP_043877263.1 AlpA family transcriptional regulator -
  BJE04_RS10750 (VV2251) radC 2272897..2273373 (+) 477 WP_039545922.1 RadC family protein Machinery gene
  BJE04_RS10755 (VV2252) - 2273370..2273798 (+) 429 WP_043877264.1 DUF2787 domain-containing protein -
  BJE04_RS10760 (VV2253) - 2273847..2274290 (+) 444 WP_011150763.1 DUF2787 domain-containing protein -
  BJE04_RS10765 (VV2254) - 2274547..2275083 (-) 537 WP_309136769.1 ribonuclease HI -
  BJE04_RS10770 (VV2255) - 2275095..2275346 (+) 252 WP_011150765.1 hypothetical protein -
  BJE04_RS10775 (VV2256) - 2275487..2275822 (+) 336 WP_011150766.1 hypothetical protein -
  BJE04_RS10780 (VV2257) - 2275925..2276623 (+) 699 WP_011150767.1 hypothetical protein -
  BJE04_RS10785 (VV2258) - 2276620..2278101 (+) 1482 WP_011150768.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18260.70 Da        Isoelectric Point: 6.6953

>NTDB_id=23585 BJE04_RS10750 WP_039545922.1 2272897..2273373(+) (radC) [Vibrio vulnificus YJ016]
MTHFPRRRYLFSQRAYEHRVLEEAAEILEQRYVRGEAFTRTQNTADYLRCKLAGYEHEVFAVLLLDNQHRLIEFKELFRG
TVDAANVYPREVVKEALHVNAAAVIFAHNHPSGDPEPSQADKRITERLKDALSLVDIRVLDHVVVGESCVSFAERGWI

Nucleotide


Download         Length: 477 bp        

>NTDB_id=23585 BJE04_RS10750 WP_039545922.1 2272897..2273373(+) (radC) [Vibrio vulnificus YJ016]
ATGACTCATTTCCCTCGCCGCCGTTATTTATTCTCTCAACGTGCCTATGAGCACCGAGTGCTTGAAGAAGCAGCAGAGAT
CCTCGAACAACGTTATGTGCGCGGTGAAGCCTTTACGCGCACGCAAAACACCGCTGATTATCTACGTTGCAAATTGGCCG
GATACGAGCACGAGGTCTTTGCCGTTTTACTGTTGGATAACCAGCATCGGCTGATTGAATTTAAGGAGCTATTTCGCGGC
ACGGTAGACGCCGCCAACGTCTATCCAAGAGAAGTAGTCAAAGAAGCATTGCACGTTAACGCTGCTGCGGTGATCTTCGC
CCATAACCACCCATCCGGTGATCCTGAACCATCTCAAGCAGACAAGCGAATAACGGAACGTTTGAAAGATGCATTATCGC
TGGTGGATATTCGCGTGCTAGATCATGTGGTCGTCGGCGAAAGCTGTGTGTCGTTTGCGGAAAGGGGATGGATATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.857

88.608

0.424

Multiple sequence alignment