Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6Y56_RS22200 Genome accession   NZ_CP027561
Coordinates   4888134..4889564 (-) Length   476 a.a.
NCBI ID   WP_169431646.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4883134..4894564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS22170 (C6Y56_22450) - 4883339..4884451 (+) 1113 WP_169431643.1 glycosyltransferase family 1 protein -
  C6Y56_RS22175 (C6Y56_22455) - 4884444..4885220 (+) 777 WP_169431644.1 polysaccharide deacetylase family protein -
  C6Y56_RS22180 (C6Y56_22460) - 4885217..4886215 (+) 999 WP_169431645.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  C6Y56_RS22185 - 4886199..4886375 (-) 177 WP_007951232.1 hypothetical protein -
  C6Y56_RS22190 (C6Y56_22465) purU 4886468..4887316 (-) 849 WP_007912774.1 formyltetrahydrofolate deformylase -
  C6Y56_RS22195 (C6Y56_22475) mvaT 4887656..4888033 (+) 378 WP_007951234.1 histone-like nucleoid-structuring protein MvaT -
  C6Y56_RS22200 (C6Y56_22480) sbcB 4888134..4889564 (-) 1431 WP_169431646.1 exodeoxyribonuclease I Machinery gene
  C6Y56_RS22205 (C6Y56_22485) - 4889745..4890470 (+) 726 WP_169431647.1 RDD family protein -
  C6Y56_RS22210 (C6Y56_22490) - 4890467..4891444 (+) 978 WP_169431648.1 stage II sporulation protein M -
  C6Y56_RS22215 (C6Y56_22495) - 4891431..4892975 (+) 1545 WP_169431649.1 DUF4129 domain-containing protein -
  C6Y56_RS22220 (C6Y56_22500) - 4892972..4894135 (+) 1164 WP_169431650.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54810.16 Da        Isoelectric Point: 5.1635

>NTDB_id=235847 C6Y56_RS22200 WP_169431646.1 4888134..4889564(-) (sbcB) [Pseudomonas fluorescens strain G7]
MTSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDEPVNLYCQPSEDILPHPAACAITGITPSRLAEQGLSEADFMTR
VHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLE
RLTAANGIDHGNAHEALSDVRATIALARLIREKQPRLYDWLFQLRSKQKVMDQIRLLQPMVHISGRFSAARSFVGVVLPL
AWHPRNKNALIVCDLHLDPQGLLDLDAQALRQRLYTRRDDLAEGELPVPLKLIHINKCPVVAPLSVLRPEDQQRLGLDMA
LYQARALRLSDAQQVWKDKVSAIYASEDFTPSEDPEQQLYDGFIGDRDRRLCEQVRTADPAQLAREQWPFDDERLPELLF
RYRARNFPDTLSFEEQERWQIFCRQRLSEPEWGAPNTLQSFAEAMEQWLLSAAPMQAQVLIEWQNYVQALRKRLNL

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=235847 C6Y56_RS22200 WP_169431646.1 4888134..4889564(-) (sbcB) [Pseudomonas fluorescens strain G7]
GTGACTTCCATCTTCTGGTACGACTACGAAACCACCGGCATCAATCCCCGATGCGACCGTCCGTTGCAGGTGGCCGGGAT
CCGCACCGACCACGAACTCAACGAAATCGACGAACCGGTCAATCTTTACTGCCAGCCCAGCGAAGACATCCTGCCGCACC
CGGCGGCGTGCGCGATCACCGGCATCACTCCGAGCCGCCTCGCCGAGCAAGGTTTGAGCGAAGCCGACTTCATGACCCGG
GTCCATGCCCAGCTCGCCGCCCCCGGCACCTGCGGCGCGGGGTACAACACCCTGCGCTTCGATGACGAGATGACCCGCTA
CAGCCTGTACCGCAACTTTTTCGATCCTTACGCCCGTGAATGGCAGGGCGGCAACAGTCGCTGGGACCTGATCGATGTGG
TGCGCGCCGCTTATGCGTTGCGTCCCGACGGGCTGGTCTGGCCAACCGATGACGAAGGCCGGGTGACGCTCAAGCTCGAA
CGCCTGACCGCTGCCAATGGCATTGATCACGGCAACGCCCACGAGGCGCTGTCGGACGTGCGCGCCACCATCGCCCTGGC
CCGGTTGATCCGCGAGAAACAGCCCCGGTTGTATGACTGGCTGTTCCAGCTGCGCAGCAAGCAGAAGGTCATGGACCAGA
TTCGCCTGTTGCAGCCGATGGTGCACATTTCCGGACGCTTTTCGGCGGCCCGCAGTTTTGTCGGTGTGGTGCTGCCGCTG
GCCTGGCATCCGCGCAACAAGAATGCGTTGATCGTCTGTGATCTGCATCTGGACCCGCAGGGCCTGCTGGATCTGGATGC
ACAGGCCTTGCGCCAGCGCCTGTATACCCGTCGCGACGATCTGGCCGAGGGTGAGCTGCCGGTGCCGCTCAAGCTGATTC
ACATCAACAAGTGCCCGGTGGTGGCGCCGTTGTCGGTGCTGAGACCTGAAGATCAGCAGCGTCTGGGGCTGGACATGGCG
CTTTATCAGGCGCGCGCATTGCGACTAAGTGACGCACAACAAGTTTGGAAAGATAAAGTCTCGGCGATTTATGCCAGCGA
AGATTTCACCCCGAGTGAAGATCCGGAACAACAGTTGTACGACGGATTTATCGGTGATCGAGACCGGCGACTATGTGAGC
AAGTGAGGACGGCAGATCCTGCACAATTGGCGCGAGAGCAATGGCCGTTCGATGACGAACGCTTGCCCGAATTGTTGTTT
CGATATCGAGCGCGTAACTTTCCGGATACGTTGAGTTTCGAAGAGCAAGAACGCTGGCAAATCTTTTGTCGGCAACGCTT
GTCCGAGCCGGAGTGGGGTGCCCCTAATACCTTGCAATCTTTTGCCGAGGCCATGGAGCAATGGCTGCTTAGTGCTGCGC
CGATGCAGGCCCAGGTGTTGATTGAATGGCAGAACTATGTCCAGGCATTACGCAAACGTTTGAATCTTTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(6-186)

Exonuclease C-terminal (ExoI_SH3)

(205-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

45.106

98.739

0.445