Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   TRNA_RS35130 Genome accession   NC_006270
Coordinates   2648900..2649529 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2643900..2654529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS35105 (BL02113) rpsT 2644114..2644380 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  TRNA_RS35110 (BL02088) holA 2644442..2645485 (-) 1044 WP_009327866.1 DNA polymerase III subunit delta -
  TRNA_RS43360 (BL02112) - 2645715..2645846 (+) 132 WP_003183686.1 YqzM family protein -
  TRNA_RS35120 (BL02087) - 2645871..2648258 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  TRNA_RS35125 (BL02086) - 2648262..2648831 (-) 570 WP_003183690.1 ComE operon protein 2 -
  TRNA_RS35130 (BL02085) comEA 2648900..2649529 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  TRNA_RS35135 (BL02111) comER 2649613..2650434 (+) 822 WP_011198131.1 late competence protein ComER -
  TRNA_RS35140 (BL02084) - 2650504..2651259 (-) 756 WP_011198132.1 class I SAM-dependent DNA methyltransferase -
  TRNA_RS35145 (BL02083) rsfS 2651256..2651612 (-) 357 WP_003183699.1 ribosome silencing factor -
  TRNA_RS35150 (BL02082) yqeK 2651626..2652189 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  TRNA_RS35155 (BL02081) - 2652179..2652748 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  TRNA_RS35160 (BL02080) yhbY 2652767..2653057 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  TRNA_RS35165 (BL02079) aroE 2653051..2653887 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=23584 TRNA_RS35130 WP_003183693.1 2648900..2649529(-) (comEA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=23584 TRNA_RS35130 WP_003183693.1 2648900..2649529(-) (comEA) [Bacillus licheniformis DSM 13 = ATCC 14580]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526

Multiple sequence alignment