Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C6Y56_RS19190 Genome accession   NZ_CP027561
Coordinates   4253256..4253864 (+) Length   202 a.a.
NCBI ID   WP_007953044.1    Uniprot ID   A0ABM5ZK13
Organism   Pseudomonas fluorescens strain G7     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4248256..4258864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS19175 (C6Y56_19415) - 4250399..4251136 (-) 738 WP_169431217.1 S-methyl-5'-thioinosine phosphorylase -
  C6Y56_RS19180 (C6Y56_19420) nagZ 4251149..4252147 (-) 999 WP_169432674.1 beta-N-acetylhexosaminidase -
  C6Y56_RS19185 (C6Y56_19425) - 4252318..4253025 (-) 708 WP_007953037.1 TetR/AcrR family transcriptional regulator -
  C6Y56_RS19190 (C6Y56_19430) dinR/lexA 4253256..4253864 (+) 609 WP_007953044.1 transcriptional repressor LexA Regulator
  C6Y56_RS19195 (C6Y56_19435) sulA 4253875..4254348 (+) 474 WP_169431218.1 SOS-induced cell division inhibitor SulA -
  C6Y56_RS19200 (C6Y56_19440) - 4254427..4254660 (-) 234 WP_003226592.1 hypothetical protein -
  C6Y56_RS19205 (C6Y56_19445) - 4254767..4255291 (-) 525 WP_169431219.1 DUF6586 family protein -
  C6Y56_RS19210 (C6Y56_19450) topA 4255463..4258093 (-) 2631 WP_169431220.1 type I DNA topoisomerase -
  C6Y56_RS19215 (C6Y56_19455) - 4258208..4258444 (-) 237 WP_007953059.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22282.76 Da        Isoelectric Point: 7.3868

>NTDB_id=235835 C6Y56_RS19190 WP_007953044.1 4253256..4253864(+) (dinR/lexA) [Pseudomonas fluorescens strain G7]
MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKVDESTL
PIIGRVAAGAPILAQQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQIVVARIGDEVTVK
RFKRDGSKVWLIAENPEFAPIEVNLKDQELVIEGLSVGVIRR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=235835 C6Y56_RS19190 WP_007953044.1 4253256..4253864(+) (dinR/lexA) [Pseudomonas fluorescens strain G7]
ATGCTTAAGCTGACGCCACGCCAAGCCGAGATTCTGGCCTTCATCAAACGCTGCCTCGAAGACAACGGCTACCCGCCGAC
CCGTGCGGAAATCGCTCAGGAACTGGGTTTCAAATCGCCCAACGCTGCCGAAGAGCATCTCAAGGCGCTCGCTCGCAAAG
GCGCGATCGAAATGACCCCAGGGGCCTCTCGCGGCATTCGAATCCCCGGCTTTGAAGCCAAAGTCGACGAATCGACCCTC
CCGATTATCGGTCGAGTGGCCGCCGGTGCGCCGATTCTCGCCCAGCAGCACATCGAAGAGTCCTGCAACATCAACCCGGC
CTTCTTCCACCCTCGCGCAGATTACCTGTTGCGGGTCCACGGGATGAGCATGAAGGACATCGGTATTTTCGACGGTGATC
TTCTGGCAGTTCACACGACCCGGGAAGCACGTAACGGCCAGATCGTAGTCGCCCGGATTGGCGATGAAGTGACGGTCAAA
CGCTTCAAGCGCGATGGCAGCAAGGTCTGGTTGATCGCAGAGAACCCCGAGTTTGCCCCCATCGAAGTCAACCTGAAAGA
TCAGGAACTGGTGATCGAAGGCTTGAGTGTCGGCGTCATCCGCCGCTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(81-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.391