Detailed information NTG0235802

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6Y56_RS05715
• Genome accession: NZ_CP027561
• Coordinates: 1300209..1301216 (+)
• Length: 335 a.a.
• NCBI ID: WP_007954831.1
• Uniprot ID: A0A345RLF2
• Organism: Pseudomonas fluorescens strain G7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1295209..1306216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Y56_RS05690 (C6Y56_05790)	ispF	1296067..1296540 (+)	474	WP_169429077.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6Y56_RS05695 (C6Y56_05795)	truD	1296537..1297595 (+)	1059	WP_134825650.1	tRNA pseudouridine(13) synthase TruD	-
C6Y56_RS05700 (C6Y56_05800)	surE	1297583..1298332 (+)	750	WP_169429078.1	5'/3'-nucleotidase SurE	-
C6Y56_RS05705 (C6Y56_05805)	-	1298374..1299009 (+)	636	WP_169432601.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C6Y56_RS05710 (C6Y56_05810)	-	1299221..1300102 (+)	882	WP_169429079.1	peptidoglycan DD-metalloendopeptidase family protein	-
C6Y56_RS05715 (C6Y56_05815)	rpoS	1300209..1301216 (+)	1008	WP_007954831.1	RNA polymerase sigma factor RpoS	Regulator
C6Y56_RS05720 (C6Y56_05825)	fdxA	1301728..1302051 (-)	324	WP_007908827.1	ferredoxin FdxA	-
C6Y56_RS05725 (C6Y56_05830)	mutS	1302216..1304798 (-)	2583	WP_169429080.1	DNA mismatch repair protein MutS	-
C6Y56_RS05730 (C6Y56_05835)	-	1305009..1305743 (+)	735	WP_169429081.1	XRE family transcriptional regulator	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38146.21 Da
• Isoelectric Point: 4.8877

>NTDB_id=235802 C6Y56_RS05715 WP_007954831.1 1300209..1301216(+) (rpoS) [Pseudomonas fluorescens strain G7]
MALSKEVPEFDIDDEVLLMETGIDSDSMSNDEGAAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPE
EEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR
EILEKNGLSSESLFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=235802 C6Y56_RS05715 WP_007954831.1 1300209..1301216(+) (rpoS) [Pseudomonas fluorescens strain G7]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTGATGGAGACCGGCATCGATTCGGATTC
GATGTCGAATGATGAAGGGGCTGCTCCACCTTCCGTTCGTGCCAAATCCAAACACTCCGCTTCACTTAAACAACACAAGT
ACATCGACTACACCCGGGCACTCGATGCCACGCAGCTGTACCTCAACGAAATCGGCTTTTCCCCATTGCTCTCCCCGGAG
GAAGAAGTTCATTTTGCGCGTCTGTCGCAAAGTGGCGACCCCGCCGGGCGCAAGCGCATGATTGAAAGTAACCTGCGGCT
GGTGGTCAAGATCGCCCGGCGTTACGTCAACCGGGGGCTGTCGCTGCTGGATCTGATCGAAGAGGGCAACCTCGGGCTGA
TCCGGGCGGTGGAAAAGTTCGATCCCGAGCGCGGCTTCCGCTTCTCGACCTACGCGACCTGGTGGATCCGTCAGACCATC
GAGCGCGCGATCATGAATCAAACCCGGACGATCCGGCTGCCGATTCATGTGGTCAAGGAACTCAACGTGTACCTGCGGGC
GGCACGGGAGCTGACGCAAAAACTCGATCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAAAAACCGGTGGGCG
AAGTCAAGCGCATGCTGGGCCTGAACGAGCGGGTTTCTTCGGTCGACGTCTCGCTGGGTCCGGATTCGGATAAAACCCTG
CTGGACACCCTCACGGACGACCGTCCGACCGATCCATGCGAACTGCTGCAGGATGACGATCTGTCGCAGAGCATCGATCA
ATGGCTCTCGGAGCTGACCGACAAGCAACGCGAGGTGGTGGTACGCCGCTTCGGTCTGCGCGGTCACGAGAGCAGCACGC
TGGAAGATGTAGGCCTGGAGATCGGCCTGACCCGGGAACGGGTGAGACAGATCCAGGTGGAAGGCCTCAAGCGCCTGCGG
GAAATCCTTGAGAAAAACGGCCTGTCGAGCGAGTCGCTGTTCCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-94)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

3D structure

• AlphaFold DB: A0A345RLF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.672	100	0.657