Detailed information NTG0235767

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6991_RS23800
• Genome accession: NZ_CP027555
• Coordinates: 4325652..4326644 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-3513
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4320652..4331644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6991_RS23770	ispD	4320774..4321423 (+)	650	Protein_4250	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6991_RS23775	ispF	4321423..4321902 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6991_RS23780	truD	4321899..4322948 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C6991_RS23785	surE	4322929..4323690 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6991_RS23790	pcm	4323684..4324310 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6991_RS23795	nlpD	4324495..4325589 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6991_RS23800	rpoS	4325652..4326644 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6991_RS23805	-	4326765..4327172 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6991_RS23810	-	4327319..4327912 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6991_RS23815	-	4327912..4329339 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6991_RS23820	-	4329350..4329586 (+)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6991_RS23825	ygbN	4329625..4330989 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=235767 C6991_RS23800 WP_000081550.1 4325652..4326644(+) (rpoS) [Escherichia coli strain 2013C-3513]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=235767 C6991_RS23800 WP_000081550.1 4325652..4326644(+) (rpoS) [Escherichia coli strain 2013C-3513]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715