Detailed information NTG0235696

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6953_RS26400
• Genome accession: NZ_CP027552
• Coordinates: 4895650..4896642 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2015C-4498
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4890650..4901642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6953_RS26375	ygbN	4891305..4892669 (+)	1365	WP_044805700.1	GntP family transporter	-
C6953_RS26380	-	4892708..4892944 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6953_RS26385	-	4892955..4894382 (-)	1428	WP_106884239.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6953_RS26390	-	4894382..4894975 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6953_RS26395	-	4895122..4895529 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6953_RS26400	rpoS	4895650..4896642 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6953_RS26405	nlpD	4896705..4897751 (-)	1047	WP_306308696.1	murein hydrolase activator NlpD	-
C6953_RS26410	pcm	4897936..4898562 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6953_RS26415	surE	4898556..4899317 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6953_RS26420	truD	4899298..4900347 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C6953_RS26425	ispF	4900344..4900823 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6953_RS26430	ispD	4900823..4901532 (-)	710	Protein_4859	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=235696 C6953_RS26400 WP_000081550.1 4895650..4896642(-) (rpoS) [Escherichia coli strain 2015C-4498]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=235696 C6953_RS26400 WP_000081550.1 4895650..4896642(-) (rpoS) [Escherichia coli strain 2015C-4498]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715