Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6953_RS26095 Genome accession   NZ_CP027552
Coordinates   4838640..4839155 (-) Length   171 a.a.
NCBI ID   WP_100032066.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-4498     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4833640..4844155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6953_RS26070 ygaZ 4834039..4834776 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C6953_RS26075 ygaH 4834766..4835101 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6953_RS26080 emrR 4835192..4835722 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6953_RS26085 emrA 4835849..4837021 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6953_RS26090 emrB 4837038..4838576 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6953_RS26095 luxS 4838640..4839155 (-) 516 WP_100032066.1 S-ribosylhomocysteine lyase Regulator
  C6953_RS26100 gshA 4839305..4840861 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6953_RS26105 yqaA 4840934..4841362 (-) 429 WP_001287457.1 YqaA family protein -
  C6953_RS26110 yqaB 4841359..4841925 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6953_RS26140 csrA 4843251..4843436 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19404.18 Da        Isoelectric Point: 5.2597

>NTDB_id=235693 C6953_RS26095 WP_100032066.1 4838640..4839155(-) (luxS) [Escherichia coli strain 2015C-4498]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGSHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=235693 C6953_RS26095 WP_100032066.1 4838640..4839155(-) (luxS) [Escherichia coli strain 2015C-4498]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGAGCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725