Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   TRNA_RS30565 Genome accession   NC_006270
Coordinates   1787940..1788842 (+) Length   300 a.a.
NCBI ID   WP_003181744.1    Uniprot ID   A0A1Y0YS93
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1782940..1793842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS30545 (BL01287) - 1783602..1785290 (+) 1689 WP_011201650.1 hypothetical protein -
  TRNA_RS30550 (BL01286) - 1785287..1785568 (+) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  TRNA_RS30555 (BL01285) sucC 1785745..1786905 (+) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  TRNA_RS30560 (BL01284) sucD 1786924..1787826 (+) 903 WP_009328521.1 succinate--CoA ligase subunit alpha -
  TRNA_RS30565 (BL01283) dprA 1787940..1788842 (+) 903 WP_003181744.1 DNA-processing protein DprA Machinery gene
  TRNA_RS30570 (BL01281) topA 1789047..1791122 (+) 2076 WP_003181746.1 type I DNA topoisomerase -
  TRNA_RS30575 (BL01280) trmFO 1791198..1792502 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  TRNA_RS30580 (BL01279) xerC 1792569..1793483 (+) 915 WP_011197974.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33196.51 Da        Isoelectric Point: 10.2533

>NTDB_id=23568 TRNA_RS30565 WP_003181744.1 1787940..1788842(+) (dprA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=23568 TRNA_RS30565 WP_003181744.1 1787940..1788842(+) (dprA) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAAAATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YS93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

39.404

100

0.397

Multiple sequence alignment