Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6953_RS12840 Genome accession   NZ_CP027552
Coordinates   2499795..2500424 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2015C-4498     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2494795..2505424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6953_RS12815 ycbZ 2495196..2496956 (-) 1761 WP_000156528.1 Lon protease family protein -
  C6953_RS12820 matP 2497142..2497594 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6953_RS12825 ompA 2497670..2498710 (-) 1041 WP_001400178.1 porin OmpA -
  C6953_RS12835 sulA 2499067..2499576 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6953_RS12840 sxy/tfoX 2499795..2500424 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6953_RS12845 yccS 2500387..2502549 (-) 2163 WP_000875023.1 YccS family putative transporter -
  C6953_RS12850 yccF 2502559..2503005 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6953_RS12855 helD 2503128..2505182 (+) 2055 WP_044806220.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=235670 C6953_RS12840 WP_000839153.1 2499795..2500424(+) (sxy/tfoX) [Escherichia coli strain 2015C-4498]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=235670 C6953_RS12840 WP_000839153.1 2499795..2500424(+) (sxy/tfoX) [Escherichia coli strain 2015C-4498]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1