Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   TRNA_RS29525 Genome accession   NC_006270
Coordinates   1582239..1582700 (-) Length   153 a.a.
NCBI ID   WP_003181285.1    Uniprot ID   A0A1Y0YEG4
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577239..1587700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS29505 (BL03647) - 1577574..1578754 (-) 1181 Protein_1564 aminotransferase A -
  TRNA_RS43775 (BL03648) - 1578946..1579101 (-) 156 WP_011197938.1 hypothetical protein -
  TRNA_RS29510 (BL03577) - 1579276..1579800 (+) 525 WP_003181280.1 RDD family protein -
  TRNA_RS29515 (BL03578) - 1579897..1581216 (+) 1320 WP_003181282.1 MFS transporter -
  TRNA_RS29520 (BL03579) - 1581290..1582207 (+) 918 WP_003181284.1 chemotaxis protein -
  TRNA_RS29525 (BL03649) kre 1582239..1582700 (-) 462 WP_003181285.1 YkyB family protein Regulator
  TRNA_RS29530 (BL03650) - 1582842..1584143 (-) 1302 WP_003181287.1 MFS transporter -
  TRNA_RS29535 (BL03652) - 1584232..1584729 (-) 498 WP_003181289.1 L,D-transpeptidase family protein -
  TRNA_RS29540 (BL03653) - 1584909..1585766 (-) 858 WP_003181293.1 metallophosphoesterase -
  TRNA_RS29545 (BL03580) fadH 1585912..1586676 (+) 765 WP_003181295.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17600.40 Da        Isoelectric Point: 10.6730

>NTDB_id=23565 TRNA_RS29525 WP_003181285.1 1582239..1582700(-) (kre) [Bacillus licheniformis DSM 13 = ATCC 14580]
MDDHNHTKELKPTVENLSKAIYTVNRHAKTATNPKYLYLLKKKALQKLLNEGKGKKVGLHFSKNPRFSQQQSDVLISLGD
YFFHMPPTKEDFANLPHLGTLNHSYRNPKAHMSLNIAKQLLQNYTGIKEKPLVTNRKRPASKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=23565 TRNA_RS29525 WP_003181285.1 1582239..1582700(-) (kre) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGGACGACCATAATCATACGAAAGAATTAAAACCGACAGTTGAAAACCTTTCAAAAGCGATTTATACAGTTAACCGCCA
TGCGAAAACCGCGACTAATCCCAAATACCTGTATCTTCTGAAAAAGAAAGCTTTGCAAAAGCTGCTTAATGAAGGAAAAG
GTAAAAAGGTAGGCCTGCATTTTTCGAAAAATCCAAGATTCAGCCAGCAGCAGTCAGATGTGCTGATATCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACAAAAGAAGACTTCGCAAACCTTCCACACTTAGGTACATTAAATCATTCGTATCGGAA
CCCTAAAGCTCATATGTCCTTGAATATAGCGAAACAGCTTCTTCAAAACTACACGGGAATCAAAGAAAAACCGCTCGTCA
CAAACCGGAAGCGTCCAGCCTCAAAACCCGTCTTCAAGAAGCTTGGCGAAAGCTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

82.468

100

0.83

Multiple sequence alignment