Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJE04_RS04140 Genome accession   NC_005139
Coordinates   812421..812882 (-) Length   153 a.a.
NCBI ID   WP_043877081.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 807421..817882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS04105 (VV0802) - 807665..809140 (-) 1476 WP_011149630.1 hypothetical protein -
  BJE04_RS04110 (VV0803) - 809140..809835 (-) 696 WP_043877079.1 hypothetical protein -
  BJE04_RS04115 (VV_RS04120) - 809941..810276 (-) 336 WP_039554195.1 hypothetical protein -
  BJE04_RS04120 (VV0805) - 810417..810668 (-) 252 WP_011149633.1 hypothetical protein -
  BJE04_RS04125 (VV0806) - 810698..811216 (+) 519 WP_011149634.1 ribonuclease HI -
  BJE04_RS04130 (VV0807) - 811471..811920 (-) 450 WP_011149635.1 DUF2787 domain-containing protein -
  BJE04_RS04135 (VV0808) - 811990..812424 (-) 435 WP_011149636.1 DUF2787 domain-containing protein -
  BJE04_RS04140 (VV0809) radC 812421..812882 (-) 462 WP_043877081.1 RadC family protein Machinery gene
  BJE04_RS04145 (VV0810) - 813012..813236 (+) 225 WP_080505637.1 AlpA family transcriptional regulator -
  BJE04_RS04150 (VV0811) - 813323..813760 (-) 438 WP_011149639.1 DUF2787 family protein -
  BJE04_RS04155 (VV0813) - 814327..817413 (+) 3087 WP_011149641.1 type I restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17291.56 Da        Isoelectric Point: 6.1408

>NTDB_id=23560 BJE04_RS04140 WP_043877081.1 812421..812882(-) (radC) [Vibrio vulnificus YJ016]
MTDYTKEQRYQENQILEHAAEILAHRYVRGNALTNPDATKEYIRCKLGAYEHEVFALLLLDNQNRPIEFKELFHGTIDAA
SVYPREVVKVVLEVNAAAVILAHNHPSGDATPSQADRRITERLKDALSLVDVRVLDHIVAGKDSVSFAERGWL

Nucleotide


Download         Length: 462 bp        

>NTDB_id=23560 BJE04_RS04140 WP_043877081.1 812421..812882(-) (radC) [Vibrio vulnificus YJ016]
ATGACCGATTACACAAAAGAGCAGCGCTATCAAGAAAACCAAATTCTTGAACATGCCGCTGAGATACTCGCTCACCGTTA
CGTGCGCGGTAACGCGCTCACCAATCCAGATGCCACTAAGGAGTACATTCGCTGCAAACTGGGGGCCTATGAACATGAAG
TGTTTGCCTTATTGCTACTGGATAACCAAAACCGACCGATTGAGTTTAAAGAGCTGTTCCACGGCACCATTGATGCGGCC
AGTGTCTACCCGCGTGAAGTGGTGAAAGTGGTGCTAGAAGTGAATGCCGCGGCCGTGATCTTGGCCCATAACCATCCTTC
TGGAGATGCAACGCCGTCACAAGCCGACAGACGCATTACCGAAAGGCTGAAAGACGCTTTATCGCTGGTGGATGTACGAG
TGCTGGACCACATTGTGGCGGGTAAAGACAGTGTATCTTTTGCTGAAAGGGGCTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(34-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.985

89.542

0.412

Multiple sequence alignment