Detailed information NTG0235573

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CEA93_RS08450
• Genome accession: NZ_CP021980
• Coordinates: 1842270..1843694 (+)
• Length: 474 a.a.
• NCBI ID: WP_013856630.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain 87-9-116
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1837270..1848694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEA93_RS08435 (CEA93_08435)	-	1837672..1839630 (-)	1959	WP_013856634.1	methyl-accepting chemotaxis protein	-
CEA93_RS08440 (CEA93_08440)	-	1839847..1840530 (+)	684	WP_013856632.1	NAD(P)H-binding protein	-
CEA93_RS08445 (CEA93_08445)	-	1840751..1842118 (+)	1368	WP_026028454.1	L-cystine transporter	-
CEA93_RS08450 (CEA93_08450)	sbcB	1842270..1843694 (+)	1425	WP_013856630.1	exodeoxyribonuclease I	Machinery gene
CEA93_RS08455 (CEA93_08455)	-	1843819..1844151 (+)	333	WP_033197434.1	CidA/LrgA family protein	-
CEA93_RS08460 (CEA93_08460)	-	1844151..1844831 (+)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
CEA93_RS08465 (CEA93_08465)	cdd	1845040..1845927 (+)	888	WP_013856628.1	cytidine deaminase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54593.05 Da
• Isoelectric Point: 5.4372

>NTDB_id=235573 CEA93_RS08450 WP_013856630.1 1842270..1843694(+) (sbcB) [Vibrio anguillarum strain 87-9-116]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCAILAPAKTLTAENAD
HIGVDRNLCLEHLALLKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=235573 CEA93_RS08450 WP_013856630.1 1842270..1843694(+) (sbcB) [Vibrio anguillarum strain 87-9-116]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGTGAACCACTGGTTATCTATTGCCAACCACCAGCGG
ACTATCTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTAGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGCCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTATACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCACTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCGCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCCTCAAGCAGTACCCAGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCGG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGATCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTAACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.973	99.789	0.808