Detailed information NTG0235572

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6950_RS12570
• Genome accession: NZ_CP027550
• Coordinates: 2355284..2356276 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2015C-4136CT1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2350284..2361276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6950_RS12550	ygbM	2350916..2351692 (+)	777	WP_001357575.1	HPr family phosphocarrier protein	-
C6950_RS12555	ygbN	2351781..2353145 (+)	1365	WP_000104433.1	GntP family transporter	-
C6950_RS12560	-	2353288..2354330 (-)	1043	Protein_2332	MBL fold metallo-hydrolase	-
C6950_RS12565	-	2354555..2355106 (+)	552	WP_001179442.1	flavodoxin family protein	-
C6950_RS12570	rpoS	2355284..2356276 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6950_RS12575	nlpD	2356339..2357433 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C6950_RS12580	pcm	2357618..2358244 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6950_RS12585	surE	2358238..2358999 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6950_RS12590	truD	2358980..2360029 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
C6950_RS12595	ispF	2360026..2360505 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6950_RS12600	ispD	2360505..2361215 (-)	711	WP_001357578.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=235572 C6950_RS12570 WP_000081550.1 2355284..2356276(-) (rpoS) [Escherichia coli strain 2015C-4136CT1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=235572 C6950_RS12570 WP_000081550.1 2355284..2356276(-) (rpoS) [Escherichia coli strain 2015C-4136CT1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCGAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715