Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6950_RS12305 Genome accession   NZ_CP027550
Coordinates   2306464..2306979 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain 2015C-4136CT1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2301464..2311979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6950_RS12285 emrA 2301612..2302784 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6950_RS12290 emrB 2302801..2304339 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6950_RS12295 - 2304597..2305304 (+) 708 WP_001097131.1 RNA ligase family protein -
  C6950_RS12300 - 2305301..2306413 (+) 1113 WP_000638134.1 ATP-binding protein -
  C6950_RS12305 luxS 2306464..2306979 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  C6950_RS12310 gshA 2307129..2308685 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C6950_RS12315 yqaA 2308758..2309186 (-) 429 WP_001287462.1 YqaA family protein -
  C6950_RS12320 yqaB 2309183..2309749 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6950_RS12350 csrA 2310938..2311123 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=235569 C6950_RS12305 WP_001130208.1 2306464..2306979(-) (luxS) [Escherichia coli strain 2015C-4136CT1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=235569 C6950_RS12305 WP_001130208.1 2306464..2306979(-) (luxS) [Escherichia coli strain 2015C-4136CT1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737