Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CEA93_RS02770 Genome accession   NZ_CP021980
Coordinates   552617..553135 (+) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio anguillarum strain 87-9-116     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 547617..558135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEA93_RS02760 (CEA93_02760) - 548029..550884 (+) 2856 WP_013857697.1 pitrilysin family protein -
  CEA93_RS02765 (CEA93_02765) gshA 550987..552552 (+) 1566 WP_029189845.1 glutamate--cysteine ligase -
  CEA93_RS02770 (CEA93_02770) luxS 552617..553135 (+) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  CEA93_RS02775 (CEA93_02775) - 553219..554493 (-) 1275 WP_017046996.1 CNNM domain-containing protein -
  CEA93_RS02780 (CEA93_02780) - 554577..555371 (-) 795 WP_026027563.1 inner membrane protein YpjD -
  CEA93_RS02785 (CEA93_02785) ffh 555674..557056 (+) 1383 WP_013857692.1 signal recognition particle protein -
  CEA93_RS02790 (CEA93_02790) rpsP 557271..557519 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CEA93_RS02795 (CEA93_02795) rimM 557549..558103 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=235558 CEA93_RS02770 WP_010319518.1 552617..553135(+) (luxS) [Vibrio anguillarum strain 87-9-116]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=235558 CEA93_RS02770 WP_010319518.1 552617..553135(+) (luxS) [Vibrio anguillarum strain 87-9-116]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCAGAAAAAGGGATCC
ACACTTTAGAACATTTATATGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGATGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACAGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment