Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CEA93_RS02635 Genome accession   NZ_CP021980
Coordinates   526168..527169 (+) Length   333 a.a.
NCBI ID   WP_017046716.1    Uniprot ID   Q4G3U1
Organism   Vibrio anguillarum strain 87-9-116     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 521168..532169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEA93_RS02605 (CEA93_02605) ispD 521311..522042 (+) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CEA93_RS02610 (CEA93_02610) ispF 522035..522520 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CEA93_RS02615 (CEA93_02615) truD 522675..523772 (+) 1098 WP_013857717.1 tRNA pseudouridine(13) synthase TruD -
  CEA93_RS02620 (CEA93_02620) surE 523785..524531 (+) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  CEA93_RS02625 (CEA93_02625) - 524531..525157 (+) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  CEA93_RS02630 (CEA93_02630) nlpD 525163..526095 (+) 933 WP_041769244.1 murein hydrolase activator NlpD -
  CEA93_RS02635 (CEA93_02635) rpoS 526168..527169 (+) 1002 WP_017046716.1 RNA polymerase sigma factor RpoS Regulator
  CEA93_RS02640 (CEA93_02640) mutS 527286..529874 (-) 2589 WP_029189955.1 DNA mismatch repair protein MutS -
  CEA93_RS02645 (CEA93_02645) cysM 530117..531007 (-) 891 WP_026027976.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38302.21 Da        Isoelectric Point: 4.4454

>NTDB_id=235555 CEA93_RS02635 WP_017046716.1 526168..527169(+) (rpoS) [Vibrio anguillarum strain 87-9-116]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
TNNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=235555 CEA93_RS02635 WP_017046716.1 526168..527169(+) (rpoS) [Vibrio anguillarum strain 87-9-116]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTAC
GTCTGAACGAGCGTATCAGTTCCGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCAGAT
ACGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAAGTCGGGCGCG
AAATTAACTTAACCCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGTCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4G3U1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment