Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJE04_RS02770 Genome accession   NC_005139
Coordinates   508471..508944 (-) Length   157 a.a.
NCBI ID   WP_011149438.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 503471..513944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS02735 (VV0516) - 503675..504112 (+) 438 WP_011149430.1 RNase H family protein -
  BJE04_RS02740 (VV0517) - 504237..505373 (+) 1137 WP_043877057.1 hypothetical protein -
  BJE04_RS02745 (VV0518) - 505824..506051 (-) 228 WP_011149432.1 hypothetical protein -
  BJE04_RS02750 (VV0519) - 506099..506458 (-) 360 WP_011149433.1 hypothetical protein -
  BJE04_RS02755 (VV_RS02770) - 506482..507223 (-) 742 Protein_475 WYL domain-containing protein -
  BJE04_RS25130 - 507362..507538 (-) 177 WP_004724457.1 hypothetical protein -
  BJE04_RS02760 (VV0523) - 507542..507985 (-) 444 WP_011149436.1 DUF2787 domain-containing protein -
  BJE04_RS02765 (VV0524) - 508037..508474 (-) 438 WP_043877058.1 DUF2787 domain-containing protein -
  BJE04_RS02770 (VV0525) radC 508471..508944 (-) 474 WP_011149438.1 RadC family protein Machinery gene
  BJE04_RS02775 (VV0526) - 509345..510181 (-) 837 WP_110096922.1 DeoR family transcriptional regulator -
  BJE04_RS02780 (VV0527) deoC 510225..510884 (-) 660 WP_011149440.1 deoxyribose-phosphate aldolase -
  BJE04_RS02785 (VV0528) rbsK 511102..512031 (+) 930 WP_011149441.1 ribokinase -
  BJE04_RS02790 (VV0529) fucP 512115..513443 (+) 1329 WP_011149442.1 L-fucose:H+ symporter permease -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17723.96 Da        Isoelectric Point: 6.0021

>NTDB_id=23554 BJE04_RS02770 WP_011149438.1 508471..508944(-) (radC) [Vibrio vulnificus YJ016]
MNPKTSDYQKQQRYQENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDNQNRLIEFKELFQGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGNTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=23554 BJE04_RS02770 WP_011149438.1 508471..508944(-) (radC) [Vibrio vulnificus YJ016]
ATGAATCCCAAAACTTCCGATTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCCGCTGAGATACT
GGCTACGCGCTACGTGCGTGGTGATGCCCTAACCAATCCTGATGCCACCAAAGAGTATGTGCGCTGTAAGCTAGGCAGCC
ATGAGCGTGAAGTGTTTGCCTTGTTGCTACTGGATAACCAAAACCGACTGATTGAATTTAAAGAGCTGTTTCAAGGAACA
GTCGATGCGGCCAGCGTCTACCCGCGAGAAGTGGTGAAAGCGGTGTTAGAAGTGAATGCCGCAGCGGTGATATTTGCCCA
TAACCATCCATCTGGTGACTCAACGCCGTCTCAAGCTGATAGACGCATAACCGAAAGACTCAAGGACGCTTTAGCGCTAG
TGGACGTTCGCGTACTTGACCATATCGTGACAGGCAATACCTGCACCTCGTTTGCTGAAAGGGGATGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.985

87.261

0.401

Multiple sequence alignment