Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   TRNA_RS25860 Genome accession   NC_006270
Coordinates   896606..897397 (+) Length   263 a.a.
NCBI ID   WP_003179917.1    Uniprot ID   A0AB37GU25
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 891606..902397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS25835 (BL03029) - 892784..893680 (+) 897 WP_003179904.1 PhzF family phenazine biosynthesis isomerase -
  TRNA_RS25840 (BL03031) - 893780..894358 (+) 579 WP_003179905.1 nitroreductase family protein -
  TRNA_RS25845 (BL05071) - 894398..894592 (-) 195 WP_003179908.1 YfhD family protein -
  TRNA_RS43135 (BL05072) - 894661..894774 (-) 114 WP_003179911.1 YfhE family protein -
  TRNA_RS25850 (BL03054) - 894841..895371 (-) 531 WP_003179913.1 GNAT family N-acetyltransferase -
  TRNA_RS25855 (BL03055) - 895638..896537 (-) 900 WP_011197673.1 TIGR01777 family oxidoreductase -
  TRNA_RS25860 (BL03032) recX 896606..897397 (+) 792 WP_003179917.1 recombination regulator RecX Regulator
  TRNA_RS25865 (BL03033) - 897402..897716 (+) 315 WP_003179919.1 YfhH family protein -
  TRNA_RS43140 - 897747..897917 (-) 171 WP_003179922.1 YpzG family protein -
  TRNA_RS25870 (BL05073) - 897944..898093 (-) 150 WP_003179924.1 small, acid-soluble spore protein K -
  TRNA_RS25875 (BL03034) - 898225..898494 (+) 270 WP_003179927.1 YfhJ family protein -
  TRNA_RS25885 (BL03035) - 899199..900158 (+) 960 WP_009329019.1 glycosyltransferase family 2 protein -
  TRNA_RS25890 (BL03036) - 900127..900528 (+) 402 WP_003179929.1 GtrA family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30353.54 Da        Isoelectric Point: 6.7748

>NTDB_id=23548 TRNA_RS25860 WP_003179917.1 896606..897397(+) (recX) [Bacillus licheniformis DSM 13 = ATCC 14580]
MPYITKISAQKNNEERVNIFLDEKYAFSVDLDVLVKFDLRKGKELDELDIIEIQYGDDVKKGFKKALDYLSYRMRSTKEV
QDHLKKKGVADSAITEILHMLKGYKYLDDREFAAAYVSTHRKTSGKGPDVLFRELKLKGIDDELIHEALSSFSFSDQVEA
AVKHAEKVLKKEKKLSSKETKQAIEQHLVRKGFSFDVISAALQETDYENDDGAEREALEKQGEKAMKRYGYDGSYETKMK
VKQYLFRKGFSIDLIDQFLDEKG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=23548 TRNA_RS25860 WP_003179917.1 896606..897397(+) (recX) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGCCATATATTACAAAGATTTCTGCCCAGAAAAACAATGAAGAGCGGGTCAATATTTTTCTGGATGAAAAATATGCGTT
CAGCGTCGACCTGGACGTGCTCGTCAAGTTTGACCTGCGAAAAGGCAAAGAGCTTGATGAGCTTGATATCATTGAGATTC
AATACGGAGACGACGTTAAAAAAGGGTTCAAAAAAGCGCTCGATTATTTGTCATACCGGATGCGCTCGACAAAGGAAGTT
CAAGACCATCTTAAGAAAAAAGGCGTCGCAGACTCCGCGATCACAGAAATTCTGCATATGCTTAAAGGTTATAAATATTT
GGACGACCGCGAATTTGCGGCTGCATATGTCAGCACCCACAGAAAAACGAGCGGCAAAGGCCCTGATGTCTTATTCAGAG
AGCTTAAATTGAAAGGGATCGATGATGAACTGATTCATGAAGCGCTCAGTTCGTTTTCGTTTTCCGATCAGGTCGAGGCC
GCGGTCAAGCATGCGGAAAAAGTACTGAAAAAAGAAAAAAAGCTGTCCTCCAAAGAGACGAAGCAGGCCATCGAACAGCA
CCTTGTCAGAAAGGGTTTCTCCTTCGATGTCATTTCGGCCGCGCTTCAGGAAACCGATTACGAAAACGACGATGGCGCTG
AGAGAGAAGCGCTTGAGAAGCAAGGAGAAAAAGCAATGAAGAGGTACGGTTATGACGGATCATACGAAACGAAAATGAAG
GTCAAACAGTATCTGTTTAGAAAAGGATTTTCAATTGACTTGATTGACCAATTTTTAGATGAAAAGGGATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

71.264

99.24

0.707

Multiple sequence alignment