Detailed information NTG0235467

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6992_RS01295
• Genome accession: NZ_CP027548
• Coordinates: 252534..253526 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-3061
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 247534..258526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6992_RS01265	ispD	247604..248314 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6992_RS01270	ispF	248314..248793 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6992_RS01275	truD	248790..249839 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
C6992_RS01280	surE	249820..250581 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6992_RS01285	pcm	250575..251201 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6992_RS01290	nlpD	251386..252471 (+)	1086	WP_306308424.1	murein hydrolase activator NlpD	-
C6992_RS01295	rpoS	252534..253526 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6992_RS01300	-	253647..254054 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6992_RS01305	-	254201..254794 (+)	594	WP_000767708.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6992_RS01310	-	254794..256221 (+)	1428	WP_000863214.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6992_RS01315	-	256232..256468 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6992_RS01320	-	256508..257038 (-)	531	Protein_245	transporter	-
C6992_RS01325	-	257034..257594 (-)	561	Protein_246	four-carbon acid sugar kinase family protein	-
C6992_RS01330	ltnD	257591..258499 (-)	909	WP_000847985.1	L-threonate dehydrogenase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=235467 C6992_RS01295 WP_000081550.1 252534..253526(+) (rpoS) [Escherichia coli strain 2014C-3061]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=235467 C6992_RS01295 WP_000081550.1 252534..253526(+) (rpoS) [Escherichia coli strain 2014C-3061]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715