Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   TRNA_RS23790 Genome accession   NC_006270
Coordinates   466247..467200 (+) Length   317 a.a.
NCBI ID   WP_003178937.1    Uniprot ID   A0AAP9UU73
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461247..472200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS23775 (BL01756) - 461295..462722 (+) 1428 WP_009330185.1 sensor histidine kinase -
  TRNA_RS23780 (BL01850) - 462755..464473 (-) 1719 WP_003178933.1 methyl-accepting chemotaxis protein -
  TRNA_RS23785 (BL01851) - 464609..465970 (-) 1362 WP_003178935.1 aspartate kinase -
  TRNA_RS23790 (BL01757) ceuB 466247..467200 (+) 954 WP_003178937.1 ABC transporter permease Machinery gene
  TRNA_RS23795 (BL01758) - 467190..468134 (+) 945 WP_003178939.1 iron chelate uptake ABC transporter family permease subunit -
  TRNA_RS23800 (BL01759) - 468134..468892 (+) 759 WP_003178940.1 ABC transporter ATP-binding protein -
  TRNA_RS23805 (BL01760) - 468907..469854 (+) 948 WP_003178942.1 siderophore ABC transporter substrate-binding protein -
  TRNA_RS23810 (BL01852) - 470023..471444 (-) 1422 WP_003178944.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35169.59 Da        Isoelectric Point: 10.1728

>NTDB_id=23546 TRNA_RS23790 WP_003178937.1 466247..467200(+) (ceuB) [Bacillus licheniformis DSM 13 = ATCC 14580]
MKLRYLLLMLIILSFSSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLKYKRVVNIGLIIVSIISSVVILTIGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=23546 TRNA_RS23790 WP_003178937.1 466247..467200(+) (ceuB) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCATTCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGACCTTTTCCGCTTTAATGAGGACGAAATTCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATCAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATCTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCAACCACCGCT
GGAACGATGGATTGGGCTCGGCTCGGCGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGGATAGTAGTCAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGCTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATTT
TCATCCCTCTCGTCGGAATGATGCTCGGGAGCGTTGTCAGCGCCATCTCTACTTTCATGGCTTATCAGTACAATATTATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTCGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTCACGTTGGCCGGGATGGGGGAGTCATTTTCCATCAATCTTGGTT
TGAAATACAAGCGGGTGGTCAATATCGGGCTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGATCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATTTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCACAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

99.685

0.511

Multiple sequence alignment